Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq7208 291 9e-74 seq691 259 5e-64 seq2365 241 1e-58 seq160 149 7e-31 seq4676 84.2 2e-11 seq3029 84.2 2e-11 >seq7208 Length=13341 Score = 291 bits (322), Expect = 9e-74 Identities = 458/649 (71%), Gaps = 5/649 (1%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | | | ||||| ||||| || | || || || | ||||| || || || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | ||||| |||| || || ||||||||||||| ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAA-CA 159980 || || || || ||||| || | ||| || || |||||| | || || | || || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 159981 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160040 | || ||||||||||| || |||| | ||| || || | | || || || || Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 160041 TTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAG 160100 |||| ||||| |||| | || || ||| | || || |||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 160101 TCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 160160 | | |||||| | | || | | |||||||||||||| |||||||| || Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 160161 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTG 160220 || | |||| |||||| ||||| |||| | || || |||| || || |||||| | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 160221 CTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160280 || | ||| | ||||||| ||||| || ||| || ||| |||| || | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 160281 TCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160340 ||||||||||||| |||| |||| ||||||||| ||| | ||||| ||||||| ||||| Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 160341 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATG 160400 | || ||||| | ||||| ||||| |||||||| || || || ||| |||||||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATA 2273 Query 160401 GATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTC 160449 | || |||| || |||||| | |||| ||||| || |||||||| || Sbjct 2274 GTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGAAACTGAATC 2322 >seq691 Length=167025 Score = 259 bits (286), Expect = 5e-64 Identities = 363/504 (72%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 159878 TTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGAT 159937 ||| | |||||| || || || |||||||||| || || | || | || || ||| Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 159938 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCA 159997 || || || | || | |||||| | | || || ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 159998 GTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCG 160057 || |||| ||| || || || | || || || || ||||||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 160058 CTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATC 160117 || || || ||| | || || |||||||||| | || | || | || ||| | | Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 160118 G-GCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCC 160176 | | | || || ||||||||||||||||||||||| || | |||| ||||||| ||| Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 130904 Query 160177 CTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTA 160236 ||||| ||||||||| || ||||| || || |||||| ||||||| ||| | | || Sbjct 130903 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 130844 Query 160237 CCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAA 160296 | | ||||||| || |||||| |||| |||| || | || |||||||||||||| || Sbjct 130843 CGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAA 130784 Query 160297 CTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGG 160356 || |||| |||||||| | | ||| ||||| |||||||||||||| || |||||| | || Sbjct 130783 CTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 130724 Query 160357 TGTTGCTGGGGTATTCGGTGGATC 160380 ||| ||||| ||| |||| ||| Sbjct 130723 TGTAGCTGGTGTAGCTGGTGCATC 130700 >seq2365 Length=77851 Score = 241 bits (266), Expect = 1e-58 Identities = 330/461 (72%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 159903 TCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTT 159962 ||||||||||||| ||| || | || || ||||| || | || || | ||||| Sbjct 13437 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCACGAGCCTATTTTTGGTT 13494 Query 159963 CACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTG 160022 | | | || || ||||| || ||||||||||| || |||| ||| | |||| Sbjct 13495 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGATTG 13547 Query 160023 GTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTG 160082 || || || || ||| |||||| ||||| || || || ||| | || || |||| Sbjct 13548 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 13602 Query 160083 GTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTG 160142 |||||| | || | || | |||||| | | || | | ||||||||||||| Sbjct 13603 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 13662 Query 160143 AGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTC 160202 |||||||||| || | |||| ||||||| ||| ||||| ||||||| | || |||| Sbjct 13663 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 13722 Query 160203 CAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCG 160262 | || | |||||| ||||||| ||| | | ||||| | ||||| || |||||| | Sbjct 13723 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 13782 Query 160263 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAAC 160322 ||| ||||||| | || |||||||||||||| |||| |||| |||||||| | | ||| | Sbjct 13783 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 13842 Query 160323 ACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 160363 |||| |||||||||||||| || |||||| | ||||| ||| Sbjct 13843 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 149 bits (164), Expect = 7e-31 Identities = 162/213 (76%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 160499 GTCGCAGC-ACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTC 160557 ||||||| | | || || || ||||| || |||||||||||||| || |||||||| Sbjct 255118 GTCGCAGTGAAACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTC 255177 Query 160558 ACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCT 160617 || ||| | |||||||| ||||| |||||||| || || |||||||||||||| | Sbjct 255178 TCGTTCTTTACACTTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTT 255234 Query 160618 TGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGA 160677 ||| || ||| ||||||||||| || ||||||||||| |||||||| || | | || Sbjct 255235 AGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 255294 Query 160678 CAACCAAGGACAAGTTCTGAACACTTGGGCAGA 160710 | |||||| | ||| | || |||||||| || Sbjct 255295 TAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 255327 >seq4676 Length=34330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 ||||||| ||||||| || ||||| || || ||||| || |||||||| |||| Sbjct 23781 TCCTTGATTCTGCTGAGGATAATGGTGTGGAGTTGCCATACTCATGCCGTGCTGGGGCTT 23722 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 |||| || || ||||| || |||||| ||| |||||||| || || ||| |||| Sbjct 23721 GCTCCACCTGCGCTGGCAAAATTGAGGCTGGCGAGGTAGATCAGTCCGACGGATCCTTCC 23662 Query 161093 TGGATGATG 161101 ||||||||| Sbjct 23661 TGGATGATG 23653 >seq3029 Length=59998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 ||||||| |||||||| || ||||| || || ||||| || |||||||| |||| Sbjct 37155 TCCTTGATGCTGCTGAGGATAATGGTGTGGAGTTGCCATACTCATGCCGTGCTGGGGCTT 37214 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 |||| || || ||||| || |||||| ||| ||||||| || || ||| |||| Sbjct 37215 GCTCCACCTGCGCTGGCAAAATTGAGGTTGGCGAGTTAGATCAGTCCGACGGATCCTTCC 37274 Query 161093 TGGATGATG 161101 ||||||||| Sbjct 37275 TGGATGATG 37283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551282204050200