Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq7208 237 2e-57 seq2365 208 1e-48 seq691 208 1e-48 seq160 149 8e-31 >seq7208 Length=13341 Score = 237 bits (262), Expect = 2e-57 Identities = 436/625 (70%), Gaps = 18/625 (3%) Strand=Plus/Plus Query 188882 GTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAACCATC 188940 |||| || || | ||||| ||||| ||||||||||||| ||| | | |||||||| || Sbjct 1707 GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACTGCAACC-TC 1764 Query 188941 TGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACC 188999 || || || ||||||| |||| || || || ||||| |||||||| || | || || Sbjct 1765 TGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCC 1824 Query 189000 CGTCGCTGGTTCACTCATGTATGGAAA-CAACATCATCTCTGGTGCTGTTGTCCCTTCAT 189058 || |||||| | || ||| |||| ||| || ||||||||||| || | |||| | Sbjct 1825 TGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTT 1884 Query 189059 CCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGC 189118 | || || | | || || ||||| | || ||||| || | | ||||| ||| Sbjct 1885 CTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGT 1944 Query 189119 TCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT 189178 | ||||| |||||||||| | || | || | |||||| | | || | || || | Sbjct 1945 TATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTT 2001 Query 189179 ---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCA 189235 | ||||||||||| |||||||| || || | |||| |||||||||||| || Sbjct 2002 GTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGAT-TG-- 2058 Query 189236 TTGCTTACTCTGCA---CCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTG 189292 ||| || || | || ||||||||||| || | || | || | |||| ||| || Sbjct 2059 TTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTG 2118 Query 189293 GTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGC 189352 ||||||| ||| ||| | | ||| | || || ||| ||| || ||||||| ||| Sbjct 2119 GTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGG 2178 Query 189353 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAG 189412 ||| ||||| ||| ||||||||||||| | ||| || || ||||| | || || || | Sbjct 2179 CTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTG 2238 Query 189413 GTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGG 189472 |||| ||||| ||||| || ||| || |||||| |||| | || |||||| || Sbjct 2239 GTGTATTCGGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGC 2297 Query 189473 TTCGTGAAACCACTGAAACCGAGTC 189497 | | || ||||||||||| || || Sbjct 2298 TCAGGGAGACCACTGAAACTGAATC 2322 >seq2365 Length=77851 Score = 208 bits (230), Expect = 1e-48 Identities = 313/440 (71%), Gaps = 20/440 (5%) Strand=Plus/Plus Query 188975 TAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCA 189034 |||| |||||||| || | ||| || | |||||| | | ||||||||||| || | Sbjct 13459 TAGATATTGATGGTATTCACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTA 13518 Query 189035 TCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGG 189094 |||||||||| || | |||||| | |||| || || ||||| || || Sbjct 13519 TCTCTGGTGCCATTTT-------TCCAACTCGATTG-----CATTTTTACCCAATTCAGG 13566 Query 189095 AAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCC 189154 |||| || || || ||||| ||| | ||||| |||||||||| | || | || | | Sbjct 13567 AAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTAC 13626 Query 189155 ACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTC 189211 ||||| | | || | || || | | |||||||||||||||||||| || | ||| Sbjct 13627 ACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTC 13683 Query 189212 TCGGTATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCA 189270 | ||||||| ||||||||| ||| |||| | || || |||||| |||| || | || Sbjct 13684 TGGGTATGCATCCTTGGAT-TGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCT 13742 Query 189271 GTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATC 189330 || || || | || ||| |||||||||| ||||||||| | ||||| || || ||| Sbjct 13743 GTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATC 13802 Query 189331 AGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 189390 ||| || ||||||| ||| |||| ||| | | ||||||||||||||| ||||| || Sbjct 13803 TCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCA 13862 Query 189391 TTCCACATGCTGGGAGTCGC 189410 || |||||| | || || || Sbjct 13863 TTTCACATGTTAGGTGTAGC 13882 >seq691 Length=167025 Score = 208 bits (230), Expect = 1e-48 Identities = 330/468 (71%), Gaps = 5/468 (1%) Strand=Plus/Minus Query 188951 TCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTT 189010 ||||||| | || || | || |||| |||||||| || ||| | || | ||||| Sbjct 131176 TCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTT 131117 Query 189011 CACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTG 189070 | | | ||||||||||| || |||||||||| || | || | | || || | Sbjct 131116 CTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCG 131057 Query 189071 GTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTG 189130 | | || || ||||| || |||||||| || || || ||||| ||| | ||||| |||| Sbjct 131056 GATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 130997 Query 189131 GTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCG-GCATCTACGCCTACATGGGTCGT 189189 |||||| | || | || | || ||| | | | | | || || ||||||||| Sbjct 130996 GTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGT--TATATGGGTCGT 130939 Query 189190 GAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGC 189248 ||||||||||| || | |||| ||||||| ||||||||| ||| |||| || || || Sbjct 130938 GAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGC 130880 Query 189249 ACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTC 189308 ||||||||||| || | || || || || | || || | |||||||| |||||| Sbjct 130879 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTC 130820 Query 189309 TGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGA 189368 ||| | ||| | || || ||| ||| || ||||||| ||| |||| ||| | | ||| Sbjct 130819 TGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGA 130760 Query 189369 GCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGT 189416 |||||||||||| ||||| || || |||||| | || || || ||||| Sbjct 130759 GCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq160 Length=286096 Score = 149 bits (164), Expect = 8e-31 Identities = 160/211 (76%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 189559 GGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCAC 189618 || ||||| ||||| | |||||||||||||| ||||||||||| ||||| | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 189619 TTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACC 189678 ||||| ||||||||||| || || || |||||||| || || | || | || || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 189679 ATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGT 189738 |||||||||||||| ||||| ||||| ||||| ||||| | ||||| | |||||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 189739 GTTCTGAACACATGGGCAGACGTTCTCAACC 189769 ||| | || || ||||| || | |||||| Sbjct 255308 GTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633972135066000