Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq7208 316 2e-81 seq691 302 5e-77 seq2365 280 2e-70 seq160 125 8e-24 >seq7208 Length=13341 Score = 316 bits (350), Expect = 2e-81 Identities = 458/640 (72%), Gaps = 5/640 (1%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | | | ||||| || || ||| |||||||| || | ||||| ||||| || Sbjct 1677 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTG 1735 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | |||||| |||| ||||||| || ||| | || ||||| Sbjct 1736 ATGATCCCTACCTTATTGACTGCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCC 1794 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAA-CA 160749 || || || || || ||||| | ||| || ||| |||||| | || ||| |||| || Sbjct 1795 TCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACA 1854 Query 160750 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCA 160809 | || ||||||||||| || |||||| ||| || || | | || || ||||| Sbjct 1855 ATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCAC 1914 Query 160810 TTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCG 160869 |||| ||||| |||| | ||||||||||| | |||||||||||||||| | || | | Sbjct 1915 TTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTG 1974 Query 160870 TATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACC 160929 | | |||||| | | || | || || |||||||| || ||||||||| | Sbjct 1975 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGAT 2034 Query 160930 GCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 | | || | ||| || ||||| ||| | ||||| | |||||||| ||||| | | Sbjct 2035 GTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAG 2094 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | | ||| | |||| ||| |||||||| ||| ||| |||||||| | | || | Sbjct 2095 CTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAA 2154 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 |||||||||| |||||||| ||| ||| ||||||||| | ||||||||||| | ||| | Sbjct 2155 TCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATC 2214 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | || ||||| || ||||| |||||||| ||||| ||||| || ||| || |||||| Sbjct 2215 CATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATA 2273 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGA 161209 |||| |||| || ||| || | | || |||||||| Sbjct 2274 GTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGA 2313 >seq691 Length=167025 Score = 302 bits (334), Expect = 5e-77 Identities = 355/475 (75%), Gaps = 5/475 (1%) Strand=Plus/Minus Query 160665 TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724 ||||||| || ||| |||| || | || | || || || ||||| || | || || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAAC 160784 |||||| | | ||||||||||| || |||||||||| || |||| ||| Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 || || || | || || ||||| |||||||||||||||||||||||||||||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 160845 AATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCG-GCATCTTCTGCTACAT 160903 |||||||||||||| | || | || | || ||| | | | | | ||| | || || Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGT--TATAT 130946 Query 160904 GGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCAT 160962 |||||| |||||||||||| | | | || || |||| || ||||| ||| ||||||| Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCAT 130887 Query 160963 ATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTT 161022 |||| || |||||||| ||||| | ||| || ||| | | || || |||||||||| Sbjct 130886 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAA 130827 Query 161023 CTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCC 161082 |||||||||||||||| | | || ||||||||||| |||||||| ||| |||| ||| Sbjct 130826 GTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCG 130767 Query 161083 AGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGT 161137 ||| ||| ||||||||||| ||||| || || |||||||| ||||| |||||||| Sbjct 130766 AGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq2365 Length=77851 Score = 280 bits (310), Expect = 2e-70 Identities = 347/472 (74%), Gaps = 16/472 (3%) Strand=Plus/Plus Query 160665 TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724 ||||||| || ||| | || ||| || | || || || ||||| | || || || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTCCAA--TAGATATTGATGGTATTCACGAGCCTATT 13487 Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAAC 160784 |||||| | | ||||||||||| || ||||||||||| | || ||||||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAAC 13540 Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 | |||| || || ||||| ||| ||||||||||||||||||||||||| | ||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 160845 AATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATG 160904 |||||||||||||| | || | || | |||||| | | || | || || ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 160905 GGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCATA 160963 ||||| |||||||||||| | | | || || |||| || ||||| ||| |||||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCAAA 13714 Query 160964 TTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTC 161023 ||| || |||||| | ||||| | ||| || ||| | | || ||| | |||||||| Sbjct 13715 TTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAG 13774 Query 161024 TTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCA 161083 |||||||||||||||||| | || ||||||||||| |||||||| ||| |||| ||| | Sbjct 13775 TTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 13834 Query 161084 GGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGT 161135 || ||| ||||||||||| ||||| || || |||||||| ||||| ||| || Sbjct 13835 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 13886 >seq160 Length=286096 Score = 125 bits (138), Expect = 8e-24 Identities = 123/158 (78%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 161280 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCAC 161339 ||||| || ||||| | ||||||||||| ||| ||||||||||| ||||| || ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 161340 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACC 161399 ||||| || || |||||||| || || |||||||||||||| | ||| | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 161400 ATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTC 161437 |||||||||||||| || || ||||| |||||||| || Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 255285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559232851315600