Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5477 201 2e-49 seq5212 104 4e-20 >seq5477 Length=8221 Score = 201 bits (222), Expect = 2e-49 Identities = 201/256 (79%), Gaps = 11/256 (4%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACATTA 126 || ||||||||||||||||||||||| ||||||||||| ||| || |||||| | Sbjct 5687 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTTTTACAAGCCCGAATAATGTT 5628 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA----CCGCC 182 |||||||||||| ||||||||| | |||||||||||||||||| | | ||| ||| Sbjct 5627 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTCT-TCGGAATCTCCGAG 5570 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| || |||||| | ||||| | ||||||||||||||| Sbjct 5569 GTAATGATTAAGAGGGACAGACGGGGGCATTCGTATTGCGACGCTAGAGGTGAAATTCTT 5510 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 ||| | ||||| ||||| ||||| || || ||||| |||||||||||||||| Sbjct 5509 GGACCGTTGCAAGACGAACTAAAGCGAAGGCATTTGCCAAGAATGTTTTCATTAATCA-A 5451 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 5450 GAACGAAAGTTAGCGG 5435 >seq5212 Length=9800 Score = 104 bits (114), Expect = 4e-20 Identities = 106/136 (78%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 185 AATGATTAATAGGGATAGTCGGGGGTG--TCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||| |||| || ||||||| || | |||||| | || || ||||||||||||||| Sbjct 6118 AATGGTTAAAAGAAATAGTCGCGGCGGCATCAGTACTGCATCGTGAGAGGTGAAATTCTT 6059 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 || || |||||||||| ||||||||||| || ||||| ||||||||||||| Sbjct 6058 AGACCGATGCAAGACTAACTGAAGCGAAAGCGTTTGCCGAGGATATTTTCATTAATCA-A 6000 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 5999 GAACGAAAGTTAGAGG 5984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915095410944