Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5212 141 4e-31 seq5477 131 7e-28 >seq5212 Length=9800 Score = 141 bits (156), Expect = 4e-31 Identities = 102/118 (86%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||||||||||||||||||||||||||| || | |||||||||||||||||||||| Sbjct 2744 TTGGGACCCGAAAGATGGTGAACTATGCTTGGGCAAATTGAAGCCAGAGGAAACTCTGGT 2685 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| | | |||| ||||| |||||||||||||||||| | || |||||||||||| Sbjct 2684 GGAGGATTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACCTGAGTATAGGGGCGA 2627 Score = 87.8 bits (96), Expect = 7e-15 Identities = 112/149 (75%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTA--- 96 ||||||||||| ||| || |||| || || || |||||||| | || ||| |||| Sbjct 3659 GAGTCGAGTTGCTTGAGAGTGCAACTTAAAGTGCGAGGTAAACTACTCGTAAGGCTATTG 3600 Query 97 -AATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACT 153 |||| ||| | || ||||||||| ||||||| |||| ||||| ||||| || ||| Sbjct 3599 TAATA-CGGCTACGACACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAATAGAACT 3541 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 ||| | |||||||| || || ||||||| Sbjct 3540 TTGCAGAGAGAGTT-AACAGGGCGTGAAA 3513 >seq5477 Length=8221 Score = 131 bits (144), Expect = 7e-28 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 |||| | ||| || ||||| |||||||||||||||| || |||||| | | |||| Sbjct 2378 GAGTCATAGCGTACACGTTGGTACCCGAAAGATGGTGAGCTTTGCCTGGGCAAGACGAAG 2319 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| | |||| ||||| |||||||||||||||||| | Sbjct 2318 CCAGAGGAAACTCTGGTGGAGGTCTGTAGCGATTCTGACGTGCAAATCGATCGTCAGACC 2259 Query 669 TGGGTATAGGGGCGA 683 |||||| |||||||| Sbjct 2258 TGGGTAAAGGGGCGA 2244 Score = 104 bits (114), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||| |||| ||| || |||||| ||||| | || |||||| | | ||||| ||||| Sbjct 3185 GAGTCAGGTTGCTTGAGAGTGCAGC-CTAAAGTAGGTGGTAAACTCCATCTAAGACTAAA 3127 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 |||| |||||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 3126 TATTACAGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 3067 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 3066 GAGAGAGTTCAATAGGACGTGAAA 3043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079754869400