Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2027 127 3e-27 seq484 122 1e-25 >seq2027 Length=61545 Score = 127 bits (140), Expect = 3e-27 Identities = 173/243 (71%), Gaps = 19/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| | ||| |||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 24624 CCTTTCGGCACTCGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAAGACC 24682 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | ||||||| |||||||||||| || || |||||||| || Sbjct 24683 TATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 24729 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | |||||||||||||| ||||||||||||| |||||||||| ||||| Sbjct 24730 ---TTTGCAAG--GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCT 24784 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | || |||||||||||||| |||||||||||||||| | Sbjct 24785 TAGAGAGAGTTGTCTCGCGCCCCCAAGTATTCTCTACCTACCCACCTGTGTCGGTTTCAG 24844 Query 246 GTA 248 ||| Sbjct 24845 GTA 24847 >seq484 Length=164630 Score = 122 bits (134), Expect = 1e-25 Identities = 172/243 (71%), Gaps = 19/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| || ||||||||||||| || |||||| | ||||| | || | |||| Sbjct 44652 CCTTCCAGCATTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTCTGTGGAGACC 44594 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 44593 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 44547 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | ||||||||||||| ||||||||| |||| |||||||||| ||||| Sbjct 44546 ---TTTGCGAG--GGGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGAGTTCCT 44492 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||| |||||||||||| | Sbjct 44491 TAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCATCTGTGTCGGTTTTAG 44432 Query 246 GTA 248 ||| Sbjct 44431 GTA 44429 Score = 89.7 bits (98), Expect = 7e-16 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 |||||||||||||||||||||| |||||||||| ||| ||| | |||| | | | Sbjct 20207 CCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCTTTAGAGAGAGTTGTCTCTTGCC 20148 Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| ||||| ||||||| |||||||||||||||| |||| Sbjct 20147 CCTAGGTATTTTCTACCTACCCACCTGTGTCGGTTTTAGGTA 20106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694323123844