Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq484 206 7e-51 seq4253 87.8 5e-15 >seq484 Length=164630 Score = 206 bits (228), Expect = 7e-51 Identities = 293/416 (70%), Gaps = 26/416 (6%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 ||||||||||| || || ||||||| || ||| ||||||| ||| ||||||| Sbjct 44841 CATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCCGAGACAGTGCCCAGATCGTTA 44782 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||| ||||||| |||||| ||||| |||||||||||||| ||||||||| ||||||||| Sbjct 44781 CGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGACCGTTAT 44722 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCCC 189 |||||||| |||||| |||| |||||| || ||||| | | || | ||| Sbjct 44721 AGTTACGGCTGCCGTTCACCGAGGCTTCAGTCGTCGGCTTCCCTATCATCAGTTCACCAA 44662 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | || ||||||| ||| |||||||||||| ||| |||| | ||| || | || Sbjct 44661 CTTTCTTGACCTTCCAGCATTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTCTG 44602 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC 309 ||| |||||||||| ||||||||||| |||||||| || ||||| | | || Sbjct 44601 TGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGC 44542 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 ||| ||| | ||||||| ||||||||| | || ||| Sbjct 44541 -----GAG-----------------GGGGCACCCCTTCTCTCGAAGTTACAGGGCTATTT 44504 Query 370 TGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCA 425 |||| |||||||| ||||| |||| || ||| ||||||||||||| | ||| Sbjct 44503 TGCCGAGTTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCA 44448 Score = 181 bits (200), Expect = 3e-43 Identities = 215/291 (74%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 ||||||||||| || || ||||||| || ||| ||||| ||| |||| || Sbjct 20506 CATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCCAGGACAGTGCCCAGATCGGTA 20447 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||| ||||||| |||||| ||||| |||||||||||||| ||||||||| ||||||||| Sbjct 20446 CGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGACCGTTAT 20387 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCCC 189 ||||||||||||||| || | ||||||| || ||||| | | || | ||| Sbjct 20386 AGTTACGGCCGCCGTTCACTGCGGCTTCGGTCGTCGGCTTCCCAGTCATCAGTTCACCAA 20327 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | || |||||| |||| ||||||| |||| ||| |||| | ||| || |||| Sbjct 20326 CTTCCTTGACCTTCTGGCATTGGGCAGGTGTCAGCCCCCATACATGGTCTTACGACTTTG 20267 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 | ||| |||||||||| ||||||||| | |||||||| || ||||| Sbjct 20266 CGGAGACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTGCGACC 20216 >seq4253 Length=18398 Score = 87.8 bits (96), Expect = 5e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 107 GGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| Sbjct 8418 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAGCGGGGCTTCG 8473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260655915776