Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq484 288 2e-75 seq2027 145 2e-32 seq4253 84.2 5e-14 seq3190 73.4 8e-11 >seq484 Length=164630 Score = 288 bits (318), Expect = 2e-75 Identities = 277/355 (78%), Gaps = 13/355 (4%) Strand=Plus/Minus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| | || | |||||||| || || | ||||||||||||| ||||||| Sbjct 44841 CATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCCGAGACAGTGCCCAGATCGTTA 44782 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 ||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||| Sbjct 44781 CGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGACCGTTAT 44722 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||||||||| |||||| || | ||||| ||| | ||||| | | | ||| || | Sbjct 44721 AGTTACGGCTGCCGTTCACCGAGGCTTCAGTCGTCGGCTTCCCTATC---ATCAGTTCAC 44665 Query 188 -------CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct 44664 CAACTTTCTTGACCTTCCAGCATTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACT 44605 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | || ||||||||||||||||||||||||| |||||| || ||||| || | Sbjct 44604 CTGTGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTT 44545 Query 301 AGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | ||||||||||||| | ||||||| ||| |||||||||||||||||| Sbjct 44544 TGCGAGGGGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTA 44490 Score = 259 bits (286), Expect = 1e-66 Identities = 267/349 (77%), Gaps = 13/349 (4%) Strand=Plus/Minus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| | || | |||||||| || || | ||||||||||| |||| || Sbjct 20506 CATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCCAGGACAGTGCCCAGATCGGTA 20447 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 ||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||| Sbjct 20446 CGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGACCGTTAT 20387 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT-CGATTGCTC---TAACAGA 183 |||||||||||||||| |||| ||||| || | |||| | | | || | || | Sbjct 20386 AGTTACGGCCGCCGTTCACTGCGGCTTCGGTCGTCGGCTTCCCAGTCATCAGTTCACCAA 20327 Query 184 TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAG 243 |||| |||||| ||| ||||||| |||||| || |||||| ||||| |||||| | Sbjct 20326 CTTCCTTGACCTTCTGGCATTGGGCAGGTGTCAGCCCCCATACATGGTCTTACGACTTTG 20267 Query 244 CAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGA 303 | || ||||||||||||||||||||||| | |||||| || ||||| || | | Sbjct 20266 CGGAGACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTGCGACCCCCTTTTG- 20208 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||| ||||||||||| |||||||||||||| ||| Sbjct 20207 --------CCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCTTTA 20167 >seq2027 Length=61545 Score = 145 bits (160), Expect = 2e-32 Identities = 134/169 (79%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||| | |||| ||||||||||||| || |||||| ||||| |||||| || Sbjct 24618 CCTTGACCTTTCGGCACTCGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGA 24677 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGA 303 | |||| |||||||||||||||||||| |||||| || ||||| ||| | | Sbjct 24678 AGACCTATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCAAG 24737 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 24738 GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 24786 >seq4253 Length=18398 Score = 84.2 bits (92), Expect = 5e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 8418 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAGCGGGGCTT 8471 >seq3190 Length=33215 Score = 73.4 bits (80), Expect = 8e-11 Identities = 75/96 (78%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTC-AGCTCCTATACATCGTCTTGCGACTTAGCA 245 |||| ||||||| |||| ||||||||| | ||| || |||||| |||| ||||| | Sbjct 24514 CCTTGACCTTCCGGCACTGGGCAGGCGCCCAGCCCCCATACATGATCTTATGACTTTGTG 24455 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 || ||||| ||||||||||| |||||| || ||| Sbjct 24454 GAGACCTGAGTTTTTGGTAA--AGTCGCCCGGACCT 24421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062278588928