Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq296 376 7e-102 seq36 201 3e-49 seq512 96.9 1e-17 >seq296 Length=208948 Score = 376 bits (416), Expect = 7e-102 Identities = 386/498 (78%), Gaps = 6/498 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| || || ||||||||||||||| Sbjct 115533 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCC-GCGCAAGCGGTGGAGCAT 115475 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| | |||||||||||||| |||||||| | || |||| Sbjct 115474 GTGGTTTAATTCGATGCAAAGTGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 115415 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| || | ||||||| ||||||| ||||||||| Sbjct 115414 TTGAAAGAGAGGGGTGCCCTC--GGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 115357 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAA-GCTTAGTTG 239 |||||| || || |||||||||| ||| ||||| |||||||||||| | | ||||||| Sbjct 115356 CTCGTGCTGTAAGGTGTTGGGTTAGGTCTCGCAATGAGCGCAACCCTCAGTGTTTAGTTG 115297 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 ||| || | ||| || || || | ||| |||||| || || |||||||| | ||| Sbjct 115296 CCACTATGA-GTTTGGAACCCTGAACAGACCACCGGTGTTAAGCCAGAGGAAGGAGAGGA 115238 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 || | ||| ||||||||||||||||| ||| | |||||||||||||||||| | | Sbjct 115237 TGAGGCCAAGTCATCATGCCCCTTATGCCCTGGTCGACACACGTGCTACAATGGGCGGGA 115178 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||||||| |||| | |||| ||| || ||| ||| || ||||||||||||| Sbjct 115177 CAAAGGGTCGCGATCTCATGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATT 115118 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCT 478 | || |||||||||| || ||||||| |||||||||||||||| | |||| ||| | Sbjct 115117 GCAGGCTGCAACTCGCCTGCATGAAGCAAGAATCGCTAGTAATCGCCGGTCAGCCATACG 115058 Query 479 ACGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 115057 GCGGTGAATCCGTTCCCG 115040 >seq36 Length=476501 Score = 201 bits (222), Expect = 3e-49 Identities = 191/242 (79%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||| ||||||||||| |||||||||| |||| ||||| Sbjct 34314 TACGTTCGCAAGAATGAAACTCAAAGAAATTGACGGGG-CCCGCACAAGTGGTGAAGCAT 34372 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||| | |||| ||||||||| |||||| ||||| || | || |||| Sbjct 34373 GTGGTTTAATTCAATGCAAAGCGAAGAACATTACCAGGGCTTGATATGCCACGAATCCTC 34432 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||| | | |||| ||| ||| | |||||| ||| ||| ||||||||| Sbjct 34433 TTGAAAGAGAAGGGTGCCCTC--GGGAACACGGACGCAGGTGGTGCCTGGCTGTCGTCAG 34490 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || |||||||||||||| |||||||| ||||||| | | |||||||| Sbjct 34491 CTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAACGCAACCTTCGTGTTTAGTTGC 34550 Query 241 CA 242 || Sbjct 34551 CA 34552 >seq512 Length=161502 Score = 96.9 bits (106), Expect = 1e-17 Identities = 63/68 (93%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 151657 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGG-CCCGCACAAGCGGTGGAGCAT 151599 Query 61 GTGGTTTA 68 |||||||| Sbjct 151598 GTGGTTTA 151591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503828122880