Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5477 223 6e-56 seq5212 98.7 2e-18 >seq5477 Length=8221 Score = 223 bits (246), Expect = 6e-56 Identities = 200/247 (81%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || Sbjct 4946 TCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 5004 Query 76 AAACTTCCATTGGCTGGAAGCCAATA--GTCCCTCTAAGAAGCCA--GCCACCAACCATA 131 || | | | | ||| | | ||||||||||||||| ||| | || Sbjct 5005 TG--TTTCGTGCGTTTGAATCAACGCCTGTCCCTCTAAGAAGCATTTGCCGGCGTTTGTA 5062 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | ||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct 5063 AGCCAACAATCTATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 5122 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 5123 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCACTGAATCAAGAAAGAGCTCTCA 5182 Query 252 ATCTGTC 258 ||||||| Sbjct 5183 ATCTGTC 5189 >seq5212 Length=9800 Score = 98.7 bits (108), Expect = 2e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||||||| ||||||||| |||||| ||||| || || || |||||||||||| Sbjct 5606 AGGTCTCACTCGTTATCGCAATTAAGCAGACGTTTCGGAATACGAATCAAGAACGGCCAT 5665 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| || ||||||||||||||||||||||||||| Sbjct 5666 GCACCACCATCCTCTGAATCAAGAAAGAGCTATCAATCTGTC 5707 Score = 89.7 bits (98), Expect = 8e-16 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 14 CGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 || || |||||| ||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 5379 CGCCATTGTAGCACGCGTGCGGCCTAGAATATCTAAGGGCATCACAGACCTGTTATTGCC 5438 Query 74 TC 75 || Sbjct 5439 TC 5440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796711787268