Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5212 354 1e-95 seq5477 347 2e-93 seq30 219 7e-55 >seq5212 Length=9800 Score = 354 bits (392), Expect = 1e-95 Identities = 237/263 (90%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 60 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 61 GGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGA 120 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 AGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGG 180 Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAA--TTTC----GAGGGACTAAAGGATCGATAGG 270 ||||||||||| |||||||||| | ||| | || | ||||||||||||||||| Sbjct 181 TAACTTTTCTGACACCTCTAGCTTGAAAACTATCAACACAACAACTAAAGGATCGATAGG 240 Query 271 CCACACTTTCATGGTTTGTATTC 293 |||| ||||| ||| | ||||| Sbjct 241 CCACGCTTTCGCGGTCTATATTC 263 Score = 334 bits (370), Expect = 1e-89 Identities = 197/205 (96%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 9596 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 9655 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 9656 TTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGA 9715 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 9716 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 9775 Query 211 CTGTGGTAACTTTTCTGGCACCTCT 235 ||||||||||||||||| ||||||| Sbjct 9776 CTGTGGTAACTTTTCTGACACCTCT 9800 >seq5477 Length=8221 Score = 347 bits (384), Expect = 2e-93 Identities = 234/260 (90%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 37 GTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 96 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTG 60 Query 97 GGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 61 GGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGA 120 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG 216 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 AGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGG 180 Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAA---TTTCGAGGGACTAAAGGATCGATAGGCCA 273 ||||||||||| ||||||| || | ||| || | || | |||||||||||||||| Sbjct 181 TAACTTTTCTGACACCTCTTGCTTAAAACTCTTAACAAGG-CAAAAGGATCGATAGGCCC 239 Query 274 CACTTTCATGGTTTGTATTC 293 | ||||| ||| |||||| Sbjct 240 CGCTTTCGCGGTCCGTATTC 259 >seq30 Length=495629 Score = 219 bits (242), Expect = 7e-55 Identities = 143/156 (92%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145100 ATAGGAAAAGC-GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 145042 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT 256 |||||||||||||||||||||||||||| || |||||||||| ||||| ||| || || Sbjct 145041 CAAGCCAGTTATCCCTGTGGTAACTTTTTTGACACCTCTAGCTTCAAACCCCGAAGGCCT 144982 Query 257 AAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 |||||||||||||||||| |||||| |||| ||||| Sbjct 144981 AAAGGATCGATAGGCCACGCTTTCACGGTTCGTATT 144946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854302359168