Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq484 131 3e-28 seq3852 95.1 2e-17 >seq484 Length=164630 Score = 131 bits (144), Expect = 3e-28 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||| ||| |||| | ||||| ||||||| ||||||||| ||||||||||| Sbjct 44971 GGGATAGTCTCAGGTAGATAGTTTCTATGGGGCGTAGCCCTCCCAAAAGGTAACGGAGGC 45030 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | ||||||||||| |||| Sbjct 45031 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCGGAAGG 45087 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| || |||||| | |||| ||||||| | Sbjct 45088 GAGCTTGACTGCAAGACTCACCCGTCAAGCAGAAACAAAAGTCAGTCTTAGTGATCCGAC 45147 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| || |||||||| ||||||||||| ||| || |||||| Sbjct 45148 GGTGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 45199 Score = 127 bits (140), Expect = 4e-27 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||| ||| |||| | ||||| ||||||| || ||||||| ||| ||||||| Sbjct 20671 GGGATAGTCTCAGGTAGATAGTTTCTATGGGGCGTAGGCTTCCCAAAAGGTAGCGGAGGC 20730 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | |||||||||||| |||| Sbjct 20731 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGG 20787 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| | ||||||| | |||| ||||| | | Sbjct 20788 GAGCTTGACTGCAAGACTCACCCGTCAAGCAGAAATGAAAGTCAGCCTTAGTGATCTGAC 20847 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| || |||||||| ||||||||||| ||| || |||||| Sbjct 20848 GGTGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 20899 >seq3852 Length=24330 Score = 95.1 bits (104), Expect = 2e-17 Identities = 130/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGC 189 ||||| |||| || |||||||||| ||||||||||||| ||||| | |||| | Sbjct 8554 AGTTTCTATGGGCCGTAGGCCTCCCAAA-AGTAACGGAGGCGTGCAAAGGTTTCCTCGGG 8612 Query 190 TTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 || ||| ||| | | |||||||||||| ||||| | || ||||| | || | Sbjct 8613 CCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAGGGAGCTTAACTGCAAGACTC 8669 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 | ||| ||||| |||||||||||| |||| ||||| | |||||| || || || ||| Sbjct 8670 ACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCTGACGGTGCCGAGTGAAAGGGC 8728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982287731328