Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq484 80.6 3e-13 >seq484 Length=164630 Score = 80.6 bits (88), Expect = 3e-13 Identities = 107/150 (71%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || ||||||||| || | | ||||||| || Sbjct 44871 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCACATCTTCACAGACATGTCTATTTCACCAAG 44812 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||| ||||| ||| Sbjct 44811 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGGACTTATCCG 44753 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||| ||||||||| |||||||| Sbjct 44752 ACAAGGAATTTTGCTACCTTAAGACCGTTA 44723 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||||| ||||| |||||||||||||| ||||||||| ||||||| Sbjct 20448 TACGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGACCGTT 20389 Query 173 A 173 | Sbjct 20388 A 20388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547139420172