Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq774 178 3e-42 seq2427 73.4 8e-11 >seq774 Length=126440 Score = 178 bits (196), Expect = 3e-42 Identities = 125/143 (87%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 56 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 115 ||||||||| || ||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 103580 CGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTGGGTCGTGTCTCAAT 103521 Query 116 TCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA 175 |||||||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| Sbjct 103520 CCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTG 103461 Query 176 CCTCACCAACTAGCTAATCCGAC 198 ||||||||||||||||||| ||| Sbjct 103460 CCTCACCAACTAGCTAATCAGAC 103438 >seq2427 Length=50504 Score = 73.4 bits (80), Expect = 8e-11 Identities = 76/97 (78%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG-TTACGGATCGTC-----GCC 161 |||| |||| ||||||| |||| ||||||||||| ||| |||| |||| || || Sbjct 25341 GTCTTAGTTTCAGTGTGGTTGATGATCCTCTCAGATCAGCTTACTGATCATCGCTTTGCT 25400 Query 162 TTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||||| || | || ||||| ||||||||||||| ||| Sbjct 25401 TTGGTAAG-CTTTGCCTCATCAACTAGCTAATCAGAC 25436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071877491840