Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq6835 78.8 2e-12 seq674 73.4 1e-10 >seq6835 Length=2990 Score = 78.8 bits (86), Expect = 2e-12 Identities = 160/228 (70%), Gaps = 15/228 (7%) Strand=Plus/Minus Query 41 AGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGAT 100 ||||||||||| |||| ||||| | | |||| ||| || |||| | | |||||||| Sbjct 1189 AGTCGGTTCGGACCTCTGCTTAGTT-TCATCCAAGCTT-CATCCTGGTCGT-GGATAGAT 1133 Query 101 CGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGC 160 | ||| | || |||||| || | | || ||| | ||||||| |||||||||||| ||| Sbjct 1132 CACCCAGGTT-CGGGTCCATATGC-AGTGACAAT-CGCCCTATGAAGACTCGCTTT-CGC 1077 Query 161 TACGCCTCCCCT-------ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCA 213 |||| |||| | |||| |||| | ||||||| || |||||| | | || Sbjct 1076 TACGGCTCCGGTGGGTTCCATTCCCTTAACCAA-GCCACTGCCTATGAGTCGCCGGCTCA 1018 Query 214 TTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTT 261 || | ||| ||| |||| |||| | || | |||||||||||| Sbjct 1017 TTCTTCAACAGGCACGCGGTCAGAGATCACTTTCTCCTCCCACTGCTT 970 >seq674 Length=138253 Score = 73.4 bits (80), Expect = 1e-10 Identities = 159/228 (70%), Gaps = 15/228 (7%) Strand=Plus/Minus Query 41 AGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGAT 100 ||||||||||| |||| ||||| | | |||| ||| || |||| | | |||||||| Sbjct 106352 AGTCGGTTCGGACCTCTGCTTAGTT-TCATCCAAGCTT-CATCCTGGTCGT-GGATAGAT 106296 Query 101 CGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGC 160 | ||| | || |||||| || | || ||| | ||||||| |||||||||||| ||| Sbjct 106295 CACCCAGGTT-CGGGTCCATAAGC-AGTGACAAT-CGCCCTATGAAGACTCGCTTT-CGC 106240 Query 161 TACGCCTCCCCT-------ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCA 213 |||| |||| | |||| |||| | ||||||| || |||||| | | || Sbjct 106239 TACGGCTCCGGTGGGTTCCATTCCCTTAACCAA-GCCACTGCCTATGAGTCGCCGGCTCA 106181 Query 214 TTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTT 261 || | ||| ||| |||| |||| | || | |||||||||||| Sbjct 106180 TTCTTCAACAGGCACGCGGTCAGAGATCACTTTCTCCTCCCACTGCTT 106133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241458109952