Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq5535 233 3e-59 seq484 210 3e-52 >seq5535 Length=5737 Score = 233 bits (258), Expect = 3e-59 Identities = 214/269 (80%), Gaps = 1/269 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| |||| |||| |||||| |||||| || |||| ||| |||||| Sbjct 4236 GGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCACCGCACTTGGCTACCCAGCG 4295 Query 64 ATGCACTTG-GCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | || ||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 4296 TTTACCGTGCGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 4355 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 4356 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 4415 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 4416 ACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCA 4475 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGAC 271 || |||| ||||| | || |||||||| Sbjct 4476 CCTACAGCTCCAGGTGGCGAAGAGCCGAC 4504 >seq484 Length=164630 Score = 210 bits (232), Expect = 3e-52 Identities = 211/273 (77%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| |||| |||| |||||| |||||| ||| |||| ||| || ||| Sbjct 21222 GGTGGGCTTACTACTTATATGCTTTCAGCAATTATCCTCTCCGCACTTGGCTACCTAGCA 21163 Query 64 ATGCACTT-GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | || | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 21162 TTTAACGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 21103 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || | |||||| |||||| ||||| || |||||| | Sbjct 21102 AGGGAAAGGTCCTCTCAATGCTCTAATGCCCACAGCGGATATGGACCAAATTGTCTCACC 21043 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 || ||||||||||||||| ||| || | ||||||||||||||||||||||||| ||| Sbjct 21042 ACATTCTGAACCCAGCTCACGTACCACAAAAATGGGCGAACAGCCCAACCCTTGGAACCA 20983 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||| ||||||| Sbjct 20982 CCTACAGCTCCAGGTGGCGAAGAGCTGACATCG 20950 Score = 210 bits (232), Expect = 3e-52 Identities = 211/273 (77%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| || ||| Sbjct 45522 GGTGGGCTTACTACTTATATGCTTTCAGCAATTATCCTCTCCGCACTTGGCTACCTAGCG 45463 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | || | | |||| || |||||||||| |||| | || ||||||||||||| Sbjct 45462 TTTACCGTAGGGACGATAACTAGTACACCAGAGGTGCGTCCTTACCAGTCCTCTCGTACT 45403 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||| ||||||||| | Sbjct 45402 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCAAACTGTCTCACC 45343 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | |||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 45342 ATGTTCTGAACCCAGCTCACGTACCACATTAATGGGCGAACAGCCCAACCCTTGGAACCA 45283 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||| ||||||| Sbjct 45282 CCTACAGCTCCAGGTGGCGAAGAGCTGACATCG 45250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780713558608