Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq774 174 5e-41 seq2427 75.2 3e-11 >seq774 Length=126440 Score = 174 bits (192), Expect = 5e-41 Identities = 140/169 (83%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 149 CAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGAT 208 ||||| | | |||||||||||||||||||||| ||| || |||||||||||||| ||| Sbjct 103424 CAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGAT 103483 Query 209 CAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCT 268 ||||||| | | |||||| ||||| |||||| ||| | ||||||||| ||| |||||| Sbjct 103484 CAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGATTGAGACACGACCCAGACTCCT 103543 Query 269 ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGC 317 || ||||||||||||||||||| || | |||||||| ||||||||| Sbjct 103544 ACAGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGC----GCCTGATGC 103588 >seq2427 Length=50504 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/100 (78%), Gaps = 7/100 (7%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTAC-----CAAGGCGACGATCAGT-A 213 |||||||||||||||||||| | ||| || |||||| ||| |||| ||||||| | Sbjct 25439 CGCGTCTGATTAGCTAGTTGATGAGGCAA-AGCTTACCAAAGCAAAGCGATGATCAGTAA 25381 Query 214 GCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253 || || |||||||| | ||| ||||| || |||| |||| Sbjct 25380 GCTGATCTGAGAGGATCATCAACCACACTGAAACTAAGAC 25341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497428854272