Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq484 118 4e-24 >seq484 Length=164630 Score = 118 bits (130), Expect = 4e-24 Identities = 132/175 (75%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||| ||||| |||||||||||||| ||||||||| || Sbjct 44787 TCGTTACGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGAC 44728 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| | |||||| || | ||||||| | | || || | | || Sbjct 44727 CGTTATAGTTACGGCTGCCGTTCACCGAGGCTTCAGTCGTCGGCTTC-CCTATCA----- 44674 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | |||| ||||||||||| ||||||||||||| || |||| Sbjct 44673 TCAGTTCACCAACTTTCTTGACCTTCCAGCATTGGGCAGGCGTCAGCCCCCATAC 44619 Score = 111 bits (122), Expect = 5e-22 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||| |||||| ||||||| |||||| ||||| |||||||||||||| ||||||||| || Sbjct 20452 TCGGTACGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGAC 20393 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| |||||||| |||| |||||| Sbjct 20392 CGTTATAGTTACGGCCGCCGTTCACTGCGGCTTC 20359 Score = 84.2 bits (92), Expect = 7e-14 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 8 GTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGCCAACCAG 66 || ||||| |||||||||||||||| || || ||||| | ||| || || | | Sbjct 45108 GTGAGTCTTGCAGTCAAGCTCCCTTCCGCCTTTGCACTCGAGGACCA-ATGTCCGTCTGG 45050 Query 67 GCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAAC 126 | |||| |||||||| |||||||||||| |||||||||||| | ||||||| |||| Sbjct 45049 CCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGGCTA-CGCCCCATAGAAAC 44991 Query 127 TACCCACCAGGCACTGTCCC 146 || | ||| | ||| |||| Sbjct 44990 TATCTACCTGAGACTATCCC 44971 Score = 75.2 bits (82), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 8 GTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGCCAACCAG 66 || ||||| |||||||||||||||| ||| || ||||| | ||| || || | | Sbjct 20808 GTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACC-AATGTCCGTCTGG 20750 Query 67 GCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAAC 126 | |||| |||||||| |||||||| ||| |||||||| | | | ||||||| |||| Sbjct 20749 CCCGAGGAAACCTTTGCACGCCTCCGCTACCTTTTGGGAAGCCTA-CGCCCCATAGAAAC 20691 Query 127 TACCCACCAGGCACTGTCCC 146 || | ||| | ||| |||| Sbjct 20690 TATCTACCTGAGACTATCCC 20671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702205449728