Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5477 423 6e-116 seq7260 255 2e-65 seq5212 141 3e-31 >seq5477 Length=8221 Score = 423 bits (468), Expect = 6e-116 Identities = 413/524 (79%), Gaps = 21/524 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || |||||||||||||| | || || ||||| || |||| ||||| | ||||||||| Sbjct 5915 GTTCTCATTCCAATTACGGGGCCTCATAAGAGTCCCGTATTGTTATTTTTCGTCACTACC 5974 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 5975 TCCCCGTTCTGGGATTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 6034 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 6035 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTAACAACCATGGT 6094 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || ||||||||||| |||||||| |||||| | ||||| || | |||||| | Sbjct 6095 AGGCATATAACCTACCATCGACAGTTGATAAGGCAGACACTTGAAAGATACGTCGCCGAC 6154 Query 240 TC-AAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCA------AGGAGCC------ 285 | ||| |||||||| | | |||||| || |||||| ||||||| Sbjct 6155 ACGTAGGTCATGCGATCAGCAATAGTTATCCAGAGTCACCACCGATTAGGAGCCGTGTTG 6214 Query 286 CCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTT-CCGA---AGTC-GGGGTTT 340 || || | | | | || |||||||||| | | || |||| ||| | ||| Sbjct 6215 CCACAGCCCCATTGGTCTTGGTCTAATAAATGCGCTTTTTCCCGATAGGGTCAAAGCTTT 6274 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 | ||| |||||||||||||||||||||| ||||||| ||||| || | ||| | Sbjct 6275 TGTGCACGTATTAGCTCTAGAATTACCACAGTTATCCGTGTAGATAGTCAAAATCTAGGG 6334 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 || ||||||||||||||||||||||||| ||||||| || | | || | |||||||| Sbjct 6335 AAACATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA-ATACGGCATGTACTTAGA 6393 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 6394 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 6437 >seq7260 Length=2048 Score = 255 bits (282), Expect = 2e-65 Identities = 231/283 (82%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 231 ATCGCCGGCTCAAGG-CCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA 289 ||||||||| ||||| |||||| || || ||||||| |||||||| ||| | ||| Sbjct 403 ATCGCCGGCACAAGGGCCATGCAATCTGTCAAGTTATCATGAATCATT--GGATCAGCGA 346 Query 290 ----AGG--GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTT 342 || |||| | ||||||||||||||| | ||||| || ||||||||||||| Sbjct 345 GCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCAGAAGTCGGGGTTTGC 286 Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 ||| ||||||||||||||||||| |||||||||| |||| | | ||| |||||| ||| Sbjct 285 TGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCACG-TACCATCAAACAAA 227 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGAC 461 | |||||||||||||||||||||||| |||||||| || | ||| || |||||| || Sbjct 226 CTATAACTGATTTAATGAGCCATTCGTAGTTTCACAGTTTGAATTAGTTCATACTTGCAC 167 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 124 >seq5212 Length=9800 Score = 141 bits (156), Expect = 3e-31 Identities = 135/168 (80%), Gaps = 10/168 (6%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT---ACTATCAAATA 400 |||||||||||||||||||||||||| ||||||||| || || | || ||||| || Sbjct 7109 GCATGTATTAGCTCTAGAATTACCACAGTTATCCATATA--AACTTTAAACAATCAAGTA 7166 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT-ATAGATTG---CTTATACT 456 | || |||||||||||||||||||||| ||||| | | | | || | ||| ||| Sbjct 7167 GATTATGACTGATTTAATGAGCCATTCGCGGTTTCGCCCTCACAAATCGGAGCTTGAACT 7226 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||| ||||||||| || |||||||||||| Sbjct 7227 TT-ACATGCATGGCTTAATCTTCGAGACAAGCGTACGACTACTGGCAG 7273 Score = 136 bits (150), Expect = 1e-29 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||| |||| || |||||||||||| |||| | | ||||||||||||||||| Sbjct 6780 ATTGTGTAAGTTTCGCGCCTGCTGCAGACCTTAGTCCTACTAGCCGTTTCTCAGGCTTGT 6839 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||| |||| |||||| |||||||||||||| |||||||||||| | || ||| Sbjct 6840 TCTCCGGAGTCGAGCCCTAACTCCCCGTTACCCGTCACCACCATGGTAGGCAATTACCCT 6899 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 |||||| | ||||||||| ||||| | | || ||| Sbjct 6900 ACCATCCACAGTTGATAGAGCAGACACTCGATTGA 6934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510227391488