Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2074 149 5e-31 seq3589 123 2e-23 seq1824 113 4e-20 >seq2074 Length=58204 Score = 149 bits (164), Expect = 5e-31 Identities = 565/878 (64%), Gaps = 23/878 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| | | || ||| | ||||| ||||| | ||||| |||| Sbjct 22385 TGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGTTCT 22326 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA----GCGTTTATCG 61179 |||| | |||||||| || | ||| ||| || ||||||| ||| | | || Sbjct 22325 GGACCGCCGAGGAGGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCAACG 22266 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | | || | || ||||| || || | || ||||| ||||| || ||||| ||| Sbjct 22265 CG-GACGAGCGCCACTTCATCTCCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGCATC 22207 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || ||||| | | || ||| | || || || || | |||||||| Sbjct 22206 GTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCG 22147 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||||||||||||||| ||||| ||||| ||||||||||||||||| | || | Sbjct 22146 TTCTACGGCTTCCAGATCGCCATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTG 22087 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || || |||||| | || | ||||| || || | ||| ||||| |||||| | Sbjct 22086 GAGACCTACATCCGCGACGGCGCGGAGAAGGACCGGCTCTTCCGCGCCATAGAGACGGTC 22027 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 || || ||| || || || || ||| || | ||||| | || | || | Sbjct 22026 CCCGCCGTGCGCCGCAAGGCCGAGTGGACCATGCGCTGGAT--CGAGGGCGGCGAGCGC- 21970 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || | || || | | || || || |||||||| | || ||| || ||||| Sbjct 21969 TTCGCAGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTC 21910 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| ||||| ||| | |||||||| || || ||||| || || |||||| ||| ||| Sbjct 21909 TGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAG 21850 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTA 61658 | || || |||||||||||| |||| || || || || || || || | | | | | Sbjct 21849 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGCCTT-CTCTACGACCTCCT 21791 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAG---CGTGTGGGTGAGATTGTTCGTGAGGCGGTAAC 61715 | || || | ||| ||| || || | ||||| || || || || Sbjct 21790 CCGCGTCAA------GCTGGACGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGA 21737 Query 61716 TATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGT 61773 ||||| | || || |||| ||||| | ||| | ||||| |||||||||| | Sbjct 21736 CATCGAGCGCGAGTTCGTCTG--CGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGC 21679 Query 61774 GGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATG 61833 | || ||| ||||| | || || || |||||||| ||| | | | |||||| Sbjct 21678 GTGCTTATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGCTTTGGGGCAC 21619 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 ||| ||| || || || || || || | ||||| | || || ||| | || Sbjct 21618 AAGAAGATGTACAACGTCGCCAATCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGT 21559 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || || |||||||| || || ||||| || || Sbjct 21558 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 21521 >seq3589 Length=27756 Score = 123 bits (136), Expect = 2e-23 Identities = 538/840 (64%), Gaps = 17/840 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||| | || ||||| || | ||| ||| | Sbjct 17413 TACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 17354 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | | | || || | || ||||| || ||| | || Sbjct 17353 CGCCACTGGGACGCCGCGCTCAACCC-CGACGAGCGCCACTTCATCTCCCACGTGCTCGC 17295 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| || || ||||| | | || ||| | || Sbjct 17294 TTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGA 17235 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || ||| | |||||||| || |||||||||||||| ||||| ||||| |||| Sbjct 17234 CGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCA 17175 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||||||||||||| | || | || || |||||| | || | || || || || Sbjct 17174 CTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGGACCG 17115 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| ||||| ||||| | || || ||| || || || || |||||| | Sbjct 17114 CCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCG 17055 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||||| | || | || | || | || || | | || || || ||||| Sbjct 17054 CTGGAT--CGAGGGCGGCGAGCGC-TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGA 16998 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || || ||||| || ||| ||||| ||| | |||||||| || || || Sbjct 16997 GGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCAT 16938 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| || || || ||| ||| ||| | || || ||||||||||| |||| || || || Sbjct 16937 GCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTT 16878 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTG-GTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 ||| | || | | | | | || | || || | || | ||| ||| || | | Sbjct 16877 TGCGTGCCTCCTCTACGATC-TTCTCCGCGTCAA--GCTCGAC-GAGTCGCGCGTCCGCG 16822 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGT 61751 |||| || || || || ||| || | || || |||| ||||| | ||| Sbjct 16821 AGATAGTCGCCGACGCCGTCGATATAGAGCGCGAGTTCGTCTG--CGACGCGCTCCCCTG 16764 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | || |||||||||| | | || ||| ||||| || || || || |||||||| Sbjct 16763 CGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACCG 16704 Query 61812 TCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 ||| | | | ||||| ||| ||| || || | ||||| || || | || Sbjct 16703 CCTGCTCATGGCGCTGGGTCACAAGAAGATGTACAACGTGGCCAACCCGTTCGACTGGAT 16644 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || || || | |||||||| || || |||||||| || || ||||| || || Sbjct 16643 GGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 16584 >seq1824 Length=71116 Score = 113 bits (124), Expect = 4e-20 Identities = 353/543 (65%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||| | || ||||| || | ||| ||| | Sbjct 42232 TACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 42173 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | | | || || | || ||||| || ||| | || Sbjct 42172 CGCCACTGGGACGCCGCGCTCAACCC-CGACGAGCGCCACTTCATCGCCCACGTGCTAGC 42114 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| || || ||||| | | || ||| | || Sbjct 42113 TTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGA 42054 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || ||| | |||||||| || |||||||||||||| ||||| ||||| |||| Sbjct 42053 CGTCCAGGTGGCCGAGGCGCGAGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCA 41994 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||||||||||||| | || | || || |||||| | || | || || || || Sbjct 41993 CTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGGACCG 41934 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| ||||| ||||| | || || ||| || || || || |||||| | Sbjct 41933 CCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCG 41874 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||||| | || | | | || | || || | | || || || ||||| Sbjct 41873 CTGGAT--CGAGGGCGGAGAGCGC-TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGA 41817 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || || ||||| || ||| ||||| ||| | |||||||| || || || Sbjct 41816 GGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCAT 41757 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| || || || ||| ||| ||| | || || ||||||||||| |||| || || || Sbjct 41756 GCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTT 41697 Query 61635 TGC 61637 ||| Sbjct 41696 TGC 41694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397512627225920