Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq9 241 1e-58 seq3095 219 5e-52 seq2645 181 1e-40 seq748 161 1e-34 seq1688 154 2e-32 seq168 89.7 6e-13 >seq9 Length=772998 Score = 241 bits (266), Expect = 1e-58 Identities = 330/461 (72%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 159903 TCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTT 159962 ||||||||||||| ||| || | || || ||||| || | ||| || | ||||| Sbjct 516034 TCGCCTTCATCGCAGCTTCCAATA--GATATTGATGGTATTCATGAGCCTATTTTTGGTT 515977 Query 159963 CACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTG 160022 | | | || || ||||| || ||||||||||| || |||| ||| | |||| Sbjct 515976 CTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AACTCGATTG 515924 Query 160023 GTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTG 160082 || || || || ||| |||||| ||||| || || || ||| | || || |||| Sbjct 515923 -----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 515869 Query 160083 GTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTG 160142 |||||| | || | || | |||||| | | || | | ||||||||||||| Sbjct 515868 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 515809 Query 160143 AGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTC 160202 |||||||||| || | |||| ||||||| ||| ||||| ||||||| | || |||| Sbjct 515808 AGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAATTCAGCTC 515749 Query 160203 CAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCG 160262 | || | |||||| ||||||| ||| | | ||||| | ||||| || |||||| | Sbjct 515748 CTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 515689 Query 160263 ATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAAC 160322 ||| ||||||| | || |||| ||||||||| |||| |||| |||||||| | | ||| | Sbjct 515688 ATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGC 515629 Query 160323 ACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 160363 |||| |||||||||||||| || |||||| | ||||| ||| Sbjct 515628 ACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 515588 >seq3095 Length=35243 Score = 219 bits (242), Expect = 5e-52 Identities = 337/476 (71%), Gaps = 15/476 (3%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| |||| || || |||| ||||||||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || ||||| || || ||||||| | | || || ||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 159982 CATCAT-----CTCTGGTGCAGTTGTTCC---CT-CTTCCAACGCAATTGGTCTTCACTT 160032 || || ||||||||| || |||| || |||| || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 160033 CTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCA 160092 || || |||||||| ||||| | || |||||| | || || || ||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 160093 ACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACT 160152 || | || | |||||| | | || | | ||||||||||||||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 160153 CTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGC 160212 || |||||| ||||||||||| ||||| ||||||||| || ||||| || || || Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 20212 Query 160213 TGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTA 160268 |||| ||||||| ||| | | |||| | ||||| || ||| || ||||||| Sbjct 20213 TGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/155 (73%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || |||||||||||| | || ||||| || || | || ||| Sbjct 21334 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 21275 Query 161587 CCCACTGCTTATCTTGCTATTGG----CGGTTGGCTTACTGGCACGACTTTCGCTACGAG 161642 || ||||||| | ||| | || |||||| |||| || || ||||| | || Sbjct 21274 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTGGTTTACAGGGACTACTTTTGTAACTTC 21215 Query 161643 CTGGTATACCCATGGACTCGCTAGTTCCT-ATCTT 161676 ||||||||||||||| | |||||||||| ||||| Sbjct 21214 TTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 21180 >seq2645 Length=47068 Score = 181 bits (200), Expect = 1e-40 Identities = 271/381 (71%), Gaps = 3/381 (1%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 45793 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 45734 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | ||||| |||| || || ||||||||||||| || || Sbjct 45733 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 45676 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || ||||| || || ||||||| || | || || ||||| Sbjct 45675 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 45616 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || ||||||||||| || |||| |||| | || || | || || || || || Sbjct 45615 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 45556 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| ||||| | || || ||| | || || |||||||||| | || | || Sbjct 45555 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 45496 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | || ||| | | || | | ||||||||||||||||||||||| || ||| Sbjct 45495 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 45436 Query 160162 TCTCGGTATGCGTCCCTGGAT 160182 ||| ||||||||||| ||||| Sbjct 45435 TCTGGGTATGCGTCCTTGGAT 45415 Score = 176 bits (194), Expect = 5e-39 Identities = 270/381 (71%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 1032 TTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTTGGGGTTTTG 1091 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | ||||| |||| || || ||||||||||||| || || Sbjct 1092 ATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCATCGCAGC-CC 1149 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || ||||| || || ||||||| || | || || ||||| Sbjct 1150 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTATGGAAACAA 1209 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || |||||||||| || |||| |||| | || || | || || || || || Sbjct 1210 TATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTTTTACCCAAT 1269 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| ||||| | || || ||| | || || |||||||||| | || | || Sbjct 1270 TTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 1329 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | || ||| | | || | | ||||||||||||||||||||||| || ||| Sbjct 1330 TCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1389 Query 160162 TCTCGGTATGCGTCCCTGGAT 160182 ||| ||||||||||| ||||| Sbjct 1390 TCTGGGTATGCGTCCTTGGAT 1410 >seq748 Length=127770 Score = 161 bits (178), Expect = 1e-34 Identities = 160/206 (78%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 160244 GGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 160303 ||||| || ||| || ||| |||| || | || |||||||||||||| |||| |||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 160304 CTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 160363 |||||||||| ||| | ||||| ||||||| |||||| || ||||| | ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 160364 GGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTC 160423 || |||||||| || || || ||| |||||||||| | || |||| || |||||| | Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 160424 GTCAGAGAGACGACAGAAACTGAGTC 160449 |||| ||||| || |||||||| || Sbjct 126542 CTCAGGGAGACCACTGAAACTGAATC 126517 >seq1688 Length=72660 Score = 154 bits (170), Expect = 2e-32 Identities = 163/213 (77%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 160499 GTCGCAGC-ACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTC 160557 ||||||| | |||| || || ||||| || |||||||||||||| || |||||||| Sbjct 24884 GTCGCAGTGAAATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTC 24825 Query 160558 ACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCT 160617 || ||| | |||||||| |||||||||||||| | || |||||||||||||| | Sbjct 24824 TCGTTCTTTACACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTT 24768 Query 160618 TGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGA 160677 ||| || ||| ||||||||||| || ||||||||||| |||||||| || | | || Sbjct 24767 AGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 24708 Query 160678 CAACCAAGGACAAGTTCTGAACACTTGGGCAGA 160710 | |||||| | || |||| |||||||| || Sbjct 24707 TAGCCAAGGTCGCCTTATGAATACTTGGGCTGA 24675 >seq168 Length=262312 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 ||||||| |||||||| || ||||| || || ||||| || |||||||| |||| Sbjct 15077 TCCTTGATGCTGCTGAGGATAATGGTGTGGAGTTGCCATACTCATGCCGTGCTGGGGCTT 15136 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 |||| || || ||||| || |||||| ||| |||||||| || || ||| |||| Sbjct 15137 GCTCCACCTGCGCTGGCAAAATTGAGGTTGGCGAGGTAGATCAGTCCGACGGATCCTTCC 15196 Query 161093 TGGATGATG 161101 ||||||||| Sbjct 15197 TGGATGATG 15205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551297235938400