Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3095 203 4e-47 seq9 203 4e-47 seq2645 174 2e-38 seq1688 141 1e-28 seq748 116 5e-21 >seq3095 Length=35243 Score = 203 bits (224), Expect = 4e-47 Identities = 323/452 (71%), Gaps = 25/452 (6%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || |||| ||||||||||| ||||||||||||| ||| | | | ||||| Sbjct 19825 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 19883 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || |||| || ||||||| || || ||||| |||||||| || || | Sbjct 19884 T-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTG 19942 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCAT-----CTCTGGTGCTGTTGT 189050 | || || ||||||| | | ||||||||||| || || ||||||||| || | Sbjct 19943 AGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTAT 20002 Query 189051 CCCTTCATCCAAC----GCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCAC 189106 ||| | | | | || || || | ||||| ||||| |||||||| || || Sbjct 20003 TCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTG 20058 Query 189107 TCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCG 189166 | ||||||||| | ||||| || ||||||| | || | || | |||||| | | | Sbjct 20059 TTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 20118 Query 189167 GCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTC 189223 | | || || | | |||||||||||||||||||| || |||||| |||||||||| Sbjct 20119 G--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTC 20175 Query 189224 CTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTC 189282 ||||||| ||| |||| || || || ||||||||||| || | || || || || | Sbjct 20176 CTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATT 20234 Query 189283 TATCCTTTTGGTCAAGGTTCTTTCTCTGACGC 189314 | ||| |||||||||| ||| ||||| || Sbjct 20235 GACCCTATTGGTCAAGGAAGTTTTTCTGATGC 20266 >seq9 Length=772998 Score = 203 bits (224), Expect = 4e-47 Identities = 312/440 (71%), Gaps = 20/440 (5%) Strand=Plus/Minus Query 188975 TAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCA 189034 |||| |||||||| || | || || | |||||| | | ||||||||||| || | Sbjct 516012 TAGATATTGATGGTATTCATGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTA 515953 Query 189035 TCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGG 189094 |||||||||| || | |||||| | |||| || || ||||| || || Sbjct 515952 TCTCTGGTGCCATTTT-------TCCAACTCGATTG-----CATTTTTACCCAATTCAGG 515905 Query 189095 AAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCC 189154 |||| || || || ||||| ||| | ||||| |||||||||| | || | || | | Sbjct 515904 AAGCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTAC 515845 Query 189155 ACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTC 189211 ||||| | | || | || || | | |||||||||||||||||||| || | ||| Sbjct 515844 ACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTC 515788 Query 189212 TCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCA 189270 | ||||||| ||||||||| ||| |||| | || || |||||| |||| || | || Sbjct 515787 TGGGTATGCATCCTTGGAT-TGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCT 515729 Query 189271 GTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATC 189330 || || || | || ||| |||||||||| ||||||||| | ||||| || || ||| Sbjct 515728 GTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATC 515669 Query 189331 AGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 189390 ||| || ||||||| ||| |||| ||| | | ||||||||||||||| ||||| || Sbjct 515668 TTTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCA 515609 Query 189391 TTCCACATGCTGGGAGTCGC 189410 || |||||| | || || || Sbjct 515608 TTTCACATGTTAGGTGTAGC 515589 >seq2645 Length=47068 Score = 174 bits (192), Expect = 2e-38 Identities = 259/358 (72%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 || ||||| || |||| ||||| || || ||||||||||||| ||| | | | |||| Sbjct 45766 AATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTAC-CTTATTGACCACAAC 45708 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || ||||||| |||| || || || ||||| |||||||| || || | Sbjct 45707 T-TCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTG 45650 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055 | || || ||||||| || | ||||||||||| || ||||||||||| || | ||| Sbjct 45649 AGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTA 45590 Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115 | || | || || | || || ||||| || |||||||| || ||| | ||||| | Sbjct 45589 CTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAAT 45530 Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175 || | ||||| |||||||||| | || | || | || ||| | | || | || | Sbjct 45529 GGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGG--TGTA-G 45473 Query 189176 C---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT 189230 | || |||||||||||||||||||| || |||||| ||||||||||||||||| Sbjct 45472 CTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 168 bits (186), Expect = 8e-37 Identities = 258/358 (72%), Gaps = 11/358 (3%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 || ||||| || |||| ||||| || || ||||||||||||| ||| | | | |||| Sbjct 1059 AATCGTCTTTACATCGGATGGTTTGGGGTTTTGATGATCCCTAC-CTTATTGACCACAAC 1117 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || ||||||| |||| || || || ||||| |||||||| || || | Sbjct 1118 T-TCTGTATTTATTATCGCCTTCATCGCAGC-CCTCCAGTAGATATTGATGGTATTCGTG 1175 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055 | || || ||||||| || | ||||||||||| || |||||||||| || | ||| Sbjct 1176 AGCCTGTTTCTGGTTCTCTACTTTATGGAAACAATATTTTCTCTGGTGCCATTATTCCTA 1235 Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115 | || | || || | || || ||||| || |||||||| || ||| | ||||| | Sbjct 1236 CTTCTGCGGTGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCATTTGATGAAT 1295 Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175 || | ||||| |||||||||| | || | || | || ||| | | || | || | Sbjct 1296 GGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGG--TGTA-G 1352 Query 189176 C---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGAT 189230 | || |||||||||||||||||||| || |||||| ||||||||||||||||| Sbjct 1353 CTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq1688 Length=72660 Score = 141 bits (156), Expect = 1e-28 Identities = 153/202 (76%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 189557 ATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTC 189616 |||| ||||| ||||| | |||||||||||||| ||||||||||| ||||| | | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 189617 ACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCA 189676 ||||||| ||||| ||||| || | || |||||||| || || | || | || | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 189677 CCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTC 189736 | |||||||||||||| ||||| ||||| ||||| ||||| | ||||| | ||||||| Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTC 24697 Query 189737 GTGTTCTGAACACATGGGCAGA 189758 | || |||| || ||||| || Sbjct 24696 GCCTTATGAATACTTGGGCTGA 24675 >seq748 Length=127770 Score = 116 bits (128), Expect = 5e-21 Identities = 156/216 (72%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 189282 CTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTT 189341 ||| ||| ||||||||| ||| ||| | | ||| | || || ||| ||| || || Sbjct 126731 CTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTT 126672 Query 189342 CAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCT 189401 ||||| ||| |||| ||||| ||| ||||||||||||| | ||| || || ||||| | Sbjct 126671 CAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTT 126612 Query 189402 GGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTAC 189461 || || || ||||| ||||| ||||| || ||| || |||||| |||| | || || Sbjct 126611 AGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAAC 126553 Query 189462 CTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTC 189497 |||| || | | || ||||||||||| || || Sbjct 126552 CTCTAGTTTGCTCAGGGAGACCACTGAAACTGAATC 126517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633989421672000