Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20pacifica_20[genbank_20GCA_5F001602315.1_202016-03-15] 11,428 sequences; 397,009,957 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq9 280 2e-70 seq3095 250 3e-61 seq2645 219 5e-52 seq748 145 9e-30 seq1688 125 8e-24 >seq9 Length=772998 Score = 280 bits (310), Expect = 2e-70 Identities = 347/472 (74%), Gaps = 16/472 (3%) Strand=Plus/Minus Query 160665 TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724 ||||||| || ||| | || ||| || | || || || ||||| | ||| || || Sbjct 516041 TTTATTATCGCCTTCATCGCAGCTTCCAA--TAGATATTGATGGTATTCATGAGCCTATT 515984 Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAAC 160784 |||||| | | ||||||||||| || ||||||||||| | || ||||||| Sbjct 515983 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGC-------CATTTTTCCAAC 515931 Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 | |||| || || ||||| ||| ||||||||||||||||||||||||| | ||| Sbjct 515930 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 515876 Query 160845 AATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATG 160904 |||||||||||||| | || | || | |||||| | | || | || || ||| Sbjct 515875 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 515816 Query 160905 GGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCATA 160963 ||||| |||||||||||| | | | || || |||| || ||||| ||| |||||| | Sbjct 515815 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCAAA 515757 Query 160964 TTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTC 161023 ||| || |||||| | ||||| | ||| || ||| | | || ||| | |||||||| Sbjct 515756 TTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAG 515697 Query 161024 TTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCA 161083 |||||||||||||||||| | || |||| |||||| |||||||| ||| |||| ||| | Sbjct 515696 TTTCTCTGATGGTATGCCTTTAGGAATCTTTGGTACTTTCAACTTTATGATTGTATTCGA 515637 Query 161084 GGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGT 161135 || ||| ||||||||||| ||||| || || |||||||| ||||| ||| || Sbjct 515636 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTTGT 515585 >seq3095 Length=35243 Score = 250 bits (276), Expect = 3e-61 Identities = 345/477 (72%), Gaps = 17/477 (4%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | || ||||||||| |||| ||||||||||| || Sbjct 19798 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19857 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | ||||| |||| ||||||| || ||| | ||||| || Sbjct 19858 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 19916 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| ||||| || ||| ||||||| | | ||||||||||| Sbjct 19917 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 19976 Query 160751 CATCAT-----CTCTGGTGCAGTTGTTCCTTCTTCCAAC----GCAATTGGTCTTCACTT 160801 || || ||||||||| || ||||| | | | | || || || | ||||| Sbjct 19977 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 20036 Query 160802 CTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCA 160861 ||||| ||||||||||||||| ||||||| ||| | |||||||| |||||||| | Sbjct 20037 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 20092 Query 160862 ACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACT 160921 || | || | |||||| | | || | || || |||||||| ||||||||||| Sbjct 20093 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 20152 Query 160922 TTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTG 160980 | | ||| || || ||||| || ||||| ||| ||||||||||| || |||||||| | Sbjct 20153 TAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAG 20211 Query 160981 CTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTA 161037 |||| | ||| || ||| | | | ||| | |||||||| ||| ||||||| || Sbjct 20212 CTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTA 20268 >seq2645 Length=47068 Score = 219 bits (242), Expect = 5e-52 Identities = 285/390 (73%), Gaps = 3/390 (1%) Strand=Plus/Minus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 |||| || |||||| | ||| ||||| || | |||||||||||| |||| ||||| Sbjct 45802 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 45743 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGT 160681 || || |||||||||| || | ||| | |||| |||| ||||||| || ||| | Sbjct 45742 GGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCAT 45684 Query 160682 TGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTA 160741 || || || || || || || || ||||| ||||| || ||| ||||||| || | || Sbjct 45683 CGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTA 45625 Query 160742 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 160801 ||||||||| || ||||||||||| || ||||| |||| | || || | || || Sbjct 45624 TGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTT 45565 Query 160802 CTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCA 160861 ||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||| | Sbjct 45564 TTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGA 45505 Query 160862 ACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACT 160921 || | || | || ||| | | || | || || |||||||| ||||||||||| Sbjct 45504 GCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 45445 Query 160922 TTCCTACCGCCTCGGCATGCGCCCCTGGAT 160951 | | ||| || || ||||| || ||||| Sbjct 45444 TAGTTTCCGTCTGGGTATGCGTCCTTGGAT 45415 Score = 215 bits (238), Expect = 6e-51 Identities = 284/390 (73%), Gaps = 3/390 (1%) Strand=Plus/Plus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 |||| || |||||| | ||| ||||| || | |||||||||||| |||| ||||| Sbjct 1023 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAGAATCGTCTTTACATCGGATGGTTT 1082 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGT 160681 || || |||||||||| || | ||| | |||| |||| ||||||| || ||| | Sbjct 1083 GGGGTTTTGATGATCCCTACCTTATTGACCACAACT-TCTGTATTTATTATCGCCTTCAT 1141 Query 160682 TGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTA 160741 || || || || || || || || ||||| ||||| || ||| ||||||| || | || Sbjct 1142 CGCAGC-CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTCTACTTTA 1200 Query 160742 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 160801 ||||||||| || |||||||||| || ||||| |||| | || || | || || Sbjct 1201 TGGAAACAATATTTTCTCTGGTGCCATTATTCCTACTTCTGCGGTGATCGGATTGCATTT 1260 Query 160802 CTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCA 160861 ||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||| | Sbjct 1261 TTACCCAATTTGGGAAGCTGCATCATTTGATGAATGGTTATACAATGGTGGTCCTTATGA 1320 Query 160862 ACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACT 160921 || | || | || ||| | | || | || || |||||||| ||||||||||| Sbjct 1321 GCTAATTGTTCTACAGTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 1380 Query 160922 TTCCTACCGCCTCGGCATGCGCCCCTGGAT 160951 | | ||| || || ||||| || ||||| Sbjct 1381 TAGTTTCCGTCTGGGTATGCGTCCTTGGAT 1410 >seq748 Length=127770 Score = 145 bits (160), Expect = 9e-30 Identities = 151/197 (77%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 161013 GGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATG 161072 |||||||| ||| ||| |||||||| | | || ||||||||||| |||||||| ||| Sbjct 126721 GGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATG 126662 Query 161073 CTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCT 161132 |||| ||||||||| | ||||||||||| | ||| || || ||||| || ||||| ||| Sbjct 126661 GTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCT 126602 Query 161133 GGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTG 161192 ||||| ||||| ||||| || ||| || |||||| |||| |||| || ||| || Sbjct 126601 GGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTG 126543 Query 161193 GTTCGTGAAACCACTGA 161209 | | || |||||||| Sbjct 126542 CTCAGGGAGACCACTGA 126526 >seq1688 Length=72660 Score = 125 bits (138), Expect = 8e-24 Identities = 124/160 (78%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 161278 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGC 161337 ||||||| || ||||| | ||||||||||| ||| ||||||||||| ||||| || | Sbjct 24873 ATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 24814 Query 161338 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCA 161397 ||||||| || || |||||||| | || |||||||||||||| | ||| | | Sbjct 24813 ACTTCTTG---GCTGCTTGGCCTGTAATAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 24757 Query 161398 CCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTC 161437 | |||||||||||||| || || ||||| |||||||| || Sbjct 24756 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATC 24717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559248099995200