Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1810 179 2e-43 seq571 134 8e-30 seq2686 132 3e-29 seq3199 129 3e-28 seq1552 127 1e-27 seq4452 125 4e-27 seq2962 125 4e-27 seq361 125 4e-27 seq3205 109 3e-22 seq1 107 1e-21 seq1612 104 1e-20 >seq1810 Length=2008 Score = 179 bits (198), Expect = 2e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||||||||||||||||||||||||| |||||||| ||||| || || Sbjct 896 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAGCGGGTCAAAATACTAACACCGTCC 955 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 956 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 1012 >seq571 Length=440730 Score = 134 bits (148), Expect = 8e-30 Identities = 102/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT-AACATCGCC 59 ||||||||||||||||||||||| ||||||| ||| ||||| | ||| |||||| | Sbjct 341861 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCGACGGAGTCTTA-TGAGCAACATCCGC 341803 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||| ||||| |||| |||||| ||||||||||||| |||||||| Sbjct 341802 CGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATTGTCTTCGA 341745 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||||||||||||||||| |||||||| || ||||| || |||||| || Sbjct 364257 GAACCGAAAGACTTTGATTTCTCATAAGGTGCTGACGGAGTCCTAAGAGCAACATCCGCC 364198 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | |||||||| ||||| ||| |||||| |||||||||||||||||||||| Sbjct 364197 GATCCTTGGTCGGCATCGTTTATGGTCGAGACTAGGACGGTATCTGATCGTCTTCGA 364141 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||| |||||||| |||||| || | ||||| ||| |||||| || Sbjct 352409 GAACCCAAAGACTTCGATTTCTCATAAGGTTCCAACGGAGTCCAAAGAGCAACATCCGCC 352350 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | || ||||| ||||| |||| | |||| ||| |||||||||||||||||| Sbjct 352349 TATCCTTTGTTGGCATCGTTTATGGTTGATACTAGGACAGTATCTGATCGTCTTCGA 352293 >seq2686 Length=2812123 Score = 132 bits (146), Expect = 3e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| ||||||||||| ||||| || |||||| ||| Sbjct 14330 AACCCAAAGACTTTGATTTCTCATAAGGTGCCGACGGAGTCTTAAGAGCAACATCCGCCG 14389 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| |||||| ||| |||||||||||||||||| Sbjct 14390 ATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACTGTATCTGATCGTCTTCGA 14445 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || |||||||||||||||||||| ||||||||||| ||||| | |||||| | Sbjct 171 GAGCCCAAAGACTTTGATTTCTCATAAGGTGCCGACGGAGTCCTGAGAGCAACATCCGTC 230 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||| Sbjct 231 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGTACGGTATCTGATCGTCTTCGA 287 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| ||||||| ||| ||||||| ||||| || |||||| || Sbjct 32658 GAACCCAAAGACTTTCATTTCTCATAAAGTGCCGACGGAGTCCTAAGAGCAACATCCACC 32717 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| | | || |||||||||||||||||||||| Sbjct 32718 GATCCCTGGTCGGCATCGTTTATGGTTCAAATTAGGACGGTATCTGATCGTCTTCGA 32774 Score = 95.1 bits (104), Expect = 7e-18 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3 ACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGA 62 ||||||||||||| ||||||| ||||||||||| |||| || ||||| || Sbjct 11882 ACCCAAAGACTTTAATTTCTCATAAGGTGCCGACAAAGTCCTAAGAGCAACATTCGTTGA 11941 Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| || | |||| |||||| ||||||||||||||||||||| Sbjct 11942 TCCATGGTCGGCATCGTCTTTGGTTGAGACTAGAACGGTATCTGATCGTCTTCGA 11996 >seq3199 Length=2935351 Score = 129 bits (142), Expect = 3e-28 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| ||||||||||| |||| || |||||| ||| Sbjct 2517007 AACCCAAAGACTTTGATTTCTCATAAGGTGCCGACGAAGTCCTAAGAGCAACATCCGCCG 2517066 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| |||||| |||| ||| ||||||||||||| Sbjct 2517067 ATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGATATATGATCGTCTTCGA 2517122 >seq1552 Length=8757819 Score = 127 bits (140), Expect = 1e-27 Identities = 99/117 (85%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||| ||| ||||| || |||||| | Sbjct 1837254 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCGACGGAGTCCTAAGAGCAACATCCGCT 1837195 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1837194 GATCCCT-GTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1837139 >seq4452 Length=3630538 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||| ||||||||| ||||||||||| ||||| || |||||| | Sbjct 3410562 GAACCCAAAGACTCTGATTTCTCATAAGGTGCCGACGGAGTCCTAAGAGCAACATCTGTC 3410621 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||| | |||| |||||| |||||||||||||||||||||| Sbjct 3410622 GATCCCTGGTCGGCATTGTTAATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 3410678 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||||||| ||||| || |||||| | Sbjct 3435233 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGATGGAGTCCTAAGAGCAACATCCGTC 3435174 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||| | | ||||| |||| |||||| |||| ||||| || |||||||| Sbjct 3435173 GATCCCTGGTCGCCGTCGTTTATGGTTGAGACTAGGACGATATCTAATTGTCTTCGA 3435117 >seq2962 Length=1574043 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||| |||||||||||||| ||||||||| | ||||| || |||||| | Sbjct 1400518 GAACCCAAGGACTTTGATTTCTCATAAGGTGCCAATAGAGTCCTAAGAGCAACATCTATC 1400459 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||| ||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1400458 GATCCCTAGTTGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1400402 >seq361 Length=4861392 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||| |||||||||||||||||||||||||| ||||| || |||||| || Sbjct 1963291 GAACCCAATGACTTTGATTTCTCGTAAGGTGCCGACGGAGTCCTAAGTGCAACATCTGCC 1963232 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||| | ||| ||| | |||| |||||| |||||||||||||||||||||| Sbjct 1963231 GATCCCCAGTTGACATCGTTGATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1963175 Score = 111 bits (122), Expect = 9e-23 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| |||||| | || ||||| || |||||| || Sbjct 1988063 AACCCAAAGACTTTGATTTCTCATAAGGTACAGACGGAGTCCTAAGAGCAACATCTGTCG 1988004 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||||| ||||| |||| |||||| |||||||||| ||||||||||| Sbjct 1988003 ATCCTTGATCGGCATCGTTTATGGTTTAGACTAGGACGGTATCTTATCGTCTTCGA 1987948 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||||||| || ||||||||||| ||||| || ||||| || Sbjct 1976277 GAACCCAAAGACTTTGATTTATCATAAGGTGCCGATGGAGTCCTAAGAGCAACATATGCC 1976218 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| |||| ||| ||||| |||| |||||| ||| |||||||||| ||||||| Sbjct 1976217 AATCCCAGGTCGACATCGTTTATGGTTGAGACTAGGACAGTATCTGATCATCTTCGA 1976161 >seq3205 Length=2579 Score = 109 bits (120), Expect = 3e-22 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||| |||||| |||||||||| | ||||||||| | ||||| || |||||| || Sbjct 1455 GAATCCAAAGGCTTTGATTTCGCATAAGGTGCCAACGGAGTCCTAAGAGCAACATCCGCC 1514 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||| |||| ||| ||||| |||| |||||| |||||||||||||||||||| Sbjct 1515 GATCCCAGGTCGTCATCGTTTATGGTTGAGACTAAGACGGTATCTGATCGTCTTC 1569 >seq1 Length=3733942 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||| |||||||||||||| ||||||||| | ||||| || |||||| || Sbjct 541286 GAACCCAAGGACTTTGATTTCTCATAAGGTGCCAACGGAGTCCTAAGAGCAACATCTGCC 541227 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||| ||||| |||| |||| |||| | || ||||| |||||||||| || Sbjct 541226 GATCCCTAGTGGGCATCATTTATGGTTGAGACCAAGAAGGTATTTGATCGTCTTTGA 541170 >seq1612 Length=2301 Score = 104 bits (114), Expect = 1e-20 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||| |||||| |||||||||| | ||||||||| | ||||| || |||||| || Sbjct 1111 GAATCCAAAGGCTTTGATTTCGCATAAGGTGCCAACGGAGTCCTAAGAGCAACATCCGCC 1052 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||||| |||| ||| ||||| |||| |||||| ||| |||||||||||||||| Sbjct 1051 GATCCCAGGTCGTCATCGTTTATGGTTGAGACTAAGACAGTATCTGATCGTCTTC 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278385002940