Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq5746 93.3 4e-17 seq11 84.2 2e-14 seq2301 82.4 8e-14 seq16 82.4 8e-14 seq5 82.4 8e-14 seq531 77.0 3e-12 seq5571 75.2 1e-11 >seq5746 Length=162686 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 113255 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 113312 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 113313 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 113362 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 140402 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 140345 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 140344 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 140295 >seq11 Length=4280439 Score = 84.2 bits (92), Expect = 2e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 45 GTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAACTAGGCAAACTGACCCTG 104 ||||| ||||||| |||||||||| ||| || | |||||||| |||||| |||||||| Sbjct 1892888 GTTGAGTATACTAGGGCGCTTGAGAGAACCATGTCAAAGGAACTCGGCAAAATGACCCTG 1892947 Query 105 TAACTTCGGGATAAAGGGT 123 ||| ||| |||||| |||| Sbjct 1892948 TAAGTTCAGGATAAGGGGT 1892966 >seq2301 Length=11085951 Score = 82.4 bits (90), Expect = 8e-14 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| ||||| || | ||||| ||||||| |||||||||| ||| || | ||| Sbjct 9381592 CAAACCAACACAGGTGAACAAGTTGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 9381651 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| | |||| |||||| |||||||||||||| |||| Sbjct 9381652 GAACTCGACAAAATGACCCCGTAACTTCGGGATATTGGGT 9381691 >seq16 Length=385534 Score = 82.4 bits (90), Expect = 8e-14 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | ||||| ||||||| | |||||||| ||| || | ||| Sbjct 360800 CAAACAGACACAGGTGAACAAGTTGAGTATACTAGGACGCTTGAGAGAACCATGTCGAAG 360741 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| | ||| |||||| ||||||||||||||| |||| Sbjct 360740 GAACTCGAAAAAATGACCCCGTAACTTCGGGATAAGGGGT 360701 >seq5 Length=3793322 Score = 82.4 bits (90), Expect = 8e-14 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| | | | || ||| | Sbjct 10060 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCTTCCTCACAAA--G 10003 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||| | || ||| || ||| |||||||| |||||||| ||| || ||| || Sbjct 10002 GGGGTCGCGGTGACCAGGCCCGGGCGACTGTTTACCAAAAACATAGGTCTCTGCAAA 9946 >seq531 Length=5369156 Score = 77.0 bits (84), Expect = 3e-12 Identities = 85/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | | ||| | Sbjct 1987888 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTTACAAA--G 1987831 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCA-ACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || || | | |||||| |||||||||||| || Sbjct 1987830 GGGGTCGCAGTGACCAGGACCTGGGAGATTGTTTACCAAAAACACAGGTCT 1987780 >seq5571 Length=10537363 Score = 75.2 bits (82), Expect = 1e-11 Identities = 79/103 (77%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| | | | || ||| | Sbjct 10527166 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCTTCCTCACAAA--G 10527223 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACA 182 | || ||||| || ||| || ||| |||||| | |||||||| Sbjct 10527224 GGGGTCGCAGTGACCAGGCCCTGGCGACTGTTGACCAAAAACA 10527266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531170431084