Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq5746 87.8 2e-15 seq2296 82.4 7e-14 seq2801 78.8 9e-13 seq293 78.8 9e-13 seq3196 77.0 3e-12 seq11 77.0 3e-12 seq2963 75.2 1e-11 seq16 75.2 1e-11 >seq5746 Length=162686 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 113315 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 113374 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 113375 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 113420 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 140342 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 140283 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 140282 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 140237 >seq2296 Length=5115746 Score = 82.4 bits (90), Expect = 7e-14 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 70 GACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACG 129 ||||||||||||||||||||| ||||||| || | || || |||||| || |||| Sbjct 3282328 GACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACA 3282269 Query 130 CCTGCCCGGTGCCGGAAGGT 149 |||||||||||| ||||||| Sbjct 3282268 CCTGCCCGGTGCTGGAAGGT 3282249 Score = 82.4 bits (90), Expect = 7e-14 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | | |||||||||||||||||| || ||||||| || | || || Sbjct 3369991 ATACCAGGGGGTAGTGACTGTTTATTAAAAACATAGGACTCTGCTAAGTGGTAACACGAT 3370050 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 3370051 GTATAGAGTTTGACACCTGCCCGGTGCTGGAAGGT 3370085 >seq2801 Length=2595379 Score = 78.8 bits (86), Expect = 9e-13 Identities = 79/103 (77%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| | |||||||||| |||||||||| ||| ||||| | Sbjct 672332 GGTCGTAGTGACCAGGCCCAAGTGACTGTTTATCAAAAACACAGGTCTCCGCAAAGTTGT 672391 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 ||| | |||| ||| |||||||||||| |||||| ||||| Sbjct 672392 AAGACCATGTATGGGGGATGACGCCTGCCCAGTGCCGAAAGGT 672434 >seq293 Length=5431939 Score = 78.8 bits (86), Expect = 9e-13 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||||||||| || Sbjct 1676429 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCGT 1676488 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAG 147 ||| | |||| ||| ||| |||||||| ||||||| || Sbjct 1676489 AAGACCATGTATGGGGCCTGATGCCTGCCCAGTGCCGGGAG 1676529 >seq3196 Length=152778 Score = 77.0 bits (84), Expect = 3e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | | |||||||||||||||||||| ||||||| || | || | || Sbjct 26442 ATACCAGGGGGTAGTGACTGTTTATTAAAAACACAAGACTCTGCTAAGTGGTAACTCGAT 26383 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||| | ||||| ||||||| Sbjct 26382 GTATAGAGTCTGACACCTGACAGGTGCTGGAAGGT 26348 >seq11 Length=4280439 Score = 77.0 bits (84), Expect = 3e-12 Identities = 77/99 (78%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 51 GAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGT 110 ||| |||||| | | ||||||||||||||||||||||| ||||| | || | || Sbjct 1892995 GAACATACCATGGGGTAGCGACTGTTTATTAAAAACACAGTACTCTTCTAAGTGGTAACA 1893054 Query 111 GGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 || |||||| || |||| |||||||||||| |||||| Sbjct 1893055 CGATGTATAGAGTCTGAC-ACTGCCCGGTGCCAGAAGGT 1893092 >seq2963 Length=139738 Score = 75.2 bits (82), Expect = 1e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| ||||||||||| |||||||||| ||| ||||| || ||| |||| Sbjct 104343 ACCAGGCCCAAGCGACTGTTTACCAAAAACACAGATCTCCGCAAAGTCGTAAGACCACGT 104284 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||| ||| |||| |||||| || Sbjct 104283 ATGGGGGCTGACGCCTACCCAGTGCTAGAAGGTCAA 104248 >seq16 Length=385534 Score = 75.2 bits (82), Expect = 1e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | |||||||||||||||||||||| ||||||| || | | || || Sbjct 360668 ATACCAGGAGGTAGCGACTGTTTATTAAAAACACATAACTCTGCTAAGAGGTAACACGAT 360609 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTT 150 ||||| || ||| ||||| || ||| |||||||| Sbjct 360608 GTATAAAGTCTGATACCTGCTCGATGCTGGAAGGTT 360573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476773459226