Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4452 381 1e-103 seq571 381 1e-103 seq2686 376 4e-102 seq361 333 5e-89 >seq4452 Length=3630538 Score = 381 bits (422), Expect = 1e-103 Identities = 261/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| || ||| ||| |||||||||||||||||||||||||||||| Sbjct 3439435 TACTAAGTTGAATTACTATCACGGC-ACGCTCATCAGTAGGGTAAAACTAACCTGTCTCA 3439377 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||| ||||||||||| ||||||||||||||| |||||||||||||||||| ||| || Sbjct 3439376 TGACAGTCTAAACCCAACTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 3439317 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3439316 ATTCTTCTTCATAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCACTAT 3439257 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 3439256 GAAGGCTTAGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 3439197 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | | || |||||||||||||||||||| |||||| |||| |||||| Sbjct 3439196 CAAATCCCAAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 3439144 Score = 358 bits (396), Expect = 1e-96 Identities = 256/293 (87%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| || | || | | |||| ||||||||||||||||||| ||||| Sbjct 3407564 TACTAAGTTGAATTACTATCGTAGC-ATGCTCATTAGTAGGGTAAAACTAACCTTTCTCA 3407622 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| |||||||||||||||| ||||| ||||| ||||||||||||||||| ||| ||| Sbjct 3407623 TGATGGTCTAAACCCAGCTCCCGTTCTCTATTGATGGGTGAACAATCCAACACTTGGCGA 3407682 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3407683 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATAAAAAAGCAACGTCGCTAT 3407742 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| | ||||||||||||||||||||||||| |||||||||||||| |||||||||| | Sbjct 3407743 AAACACATGGCTGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTGACACCTCTAGCTT 3407802 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| || || |||||||||||||||||||| |||||| |||| |||||| Sbjct 3407803 CAAATCCAGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 3407855 Score = 318 bits (352), Expect = 1e-84 Identities = 250/296 (84%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||| ||| ||||||| |||| || || |||||||||||||||||||||||| ||||| Sbjct 3418029 TACCAAGTTGAATTACTATTGTGGA-ACTCTCATCAGTAGGGTAAAACTAACCTATCTCA 3417971 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||| |||||| ||| |||||| |||||||||||||||||| ||| ||| Sbjct 3417970 AGATGGTCTAAACCTAGCTCATGTTTCCTATTGGTGGGTGAACAATCCAACACTTGACGA 3417911 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||| ||||| ||||||| |||||||| || ||| Sbjct 3417910 ATTCTGCTTCACAATGATAGGAAGAGCCAACATCAAAGGATC-AAAAGCAATGTTGCTGC 3417852 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| | Sbjct 3417851 GAACGCTTGGTTGCCACAAGCCAGTTATCGATGTGGTAACTTTTTTGGCACCTCTAGCTT 3417792 Query 241 CAAATTTCGAGGGACTAAAGGATCGATA---GGCCACACTTTCATGGTTTGTATTC 293 ||||| || || ||| ||||| |||| |||||| ||||||||||| |||||| Sbjct 3417791 CAAATCCTGAAGGTCTAGAGGATTGATAGGCGGCCACGCTTTCATGGTTCGTATTC 3417736 >seq571 Length=440730 Score = 381 bits (422), Expect = 1e-103 Identities = 261/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| |||| | | ||| |||||||||||||||||||||||||||||| Sbjct 368535 TACTAAGTTGAATTACTATTGCGAC-ACGCTCATCAGTAGGGTAAAACTAACCTGTCTCA 368477 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||| ||||||||||||||| |||||||||||||||||| ||| | | Sbjct 368476 CGATGGTCTAAACCCATCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGCAA 368417 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 368416 ATTCTGCTTCACAATGATAGAAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 368357 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | | Sbjct 368356 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGCAACTTTTCTGATACCTCTACCTT 368297 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| |||| || |||||| ||||||||||||| |||||| |||| ||||| Sbjct 368296 CAAATCTCGAAGGTCTAAAGTATCGATAGGCCACGCTTTCACGGTTCATATTC 368244 Score = 349 bits (386), Expect = 6e-94 Identities = 254/293 (87%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| || | ||| | | ||||||||||||||||||||| |||||||| Sbjct 356759 TACTAAGTTGAATTACTATCGAGGC-ATGCTCATCAGTAGGGTAAAACTAATCTGTCTCA 356701 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||| || |||||||||| | |||||||||||||||||| |||| | | Sbjct 356700 TGACGGTCTAAACCCAACTAACGTTCCCTAGTGGTGGGTGAACAATCCAACACTTAGCAA 356641 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||| || || ||||||||||||||||||||||||||||| Sbjct 356640 ATTCTGCTTCACAATGATAGGAATAGTTGATATCGAAGGATCAAAAAGCAACGTCGCTAT 356581 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||| ||||||||||||||||||||||||||| ||| || ||||||| || | Sbjct 356580 GAACGCTTGGCTACCACAAGCCAGTTATCCCTGTGGTAACATTTTTGACACCTCTTGCTT 356521 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| ||| || ||||||||||||||||||| |||||| ||| ||| || Sbjct 356520 CAAATCCCGAAGGTCTAAAGGATCGATAGGCCATGCTTTCACAGTTCGTAATC 356468 Score = 327 bits (362), Expect = 2e-87 Identities = 251/294 (85%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| || | || ||| ||||| ||||||||||||||||||||| || Sbjct 320369 TACTAAGTTGAATTACTATCGCAGC-ACGCTCATCTGTAGGGTAAAACTAACCTGTCACA 320311 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||| Sbjct 320310 TGATGGTCTAATCCCAGCTTACGTTCCCTATTAGTGGGTGAACAATCCAACACTTGGCGA 320251 Query 121 ATTCTGCTTCGGTATGAT-AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||| | | || ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 320250 ATTAAAGAAAG--AAGAGGAGGTAGAGCCGACATTGAAGGATCAAAAAGCAACGTCGCTA 320193 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| | Sbjct 320192 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCGGACACATCTAACT 320133 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| | | || ||||||||||||| |||||| |||||| ||||||||||| Sbjct 320132 TCAAATCCCAAAGGTCTAAAGGATCGATTGGCCACGCTTTCACGGTTTGTATTC 320079 >seq2686 Length=2812123 Score = 376 bits (416), Expect = 4e-102 Identities = 260/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||||| || | ||| ||| |||||||||||||||||||||||||||||| Sbjct 45635 TACTAAGTTGAATTACTATCGTGGC-ACGCTCATCAGTAGGGTAAAACTAACCTGTCTCA 45693 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||| | |||| |||||||||||||||||| ||| | || Sbjct 45694 CGACGGTCTAAACCCAGCTCACGTTTCTTATTGGTGGGTGAACAATCCAACACTTGCTGA 45753 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||| |||||||||| || |||||||||||||||||| ||||||| Sbjct 45754 ATTCTGCTTCACAATGATATGAAGAGCCGATATTGAAGGATCAAAAAGCAACATCGCTAT 45813 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | Sbjct 45814 GAACGCTTGGCTGCCACAAGTCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 45873 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | | || |||||||||||||||||||| |||| | |||| |||||| Sbjct 45874 CAAATCCCAAAGGTCTAAAGGATCGATAGGCCACGCTTTAACGGTTCGTATTC 45926 Score = 358 bits (396), Expect = 1e-96 Identities = 241/268 (90%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 7822 ACGCTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACATTC 7881 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||| ||||||||| |||||||| ||| |||||| |||||| ||||||||||||| Sbjct 7882 CCTATTGGTGGGTGAAAAATCCAACACTTGGCGAATTTTGCTTCATAATGATAGGAAGAG 7941 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG-CCACAAGCCAGT 205 | ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 7942 CGGACATCGAAGGATCAAAAAGCAATGTCGCTATGAACGCTTGGCTGCCCACAAGCCAGT 8001 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCG 265 ||||||||||||||||||| || |||||||||| |||||| |||| || ||||| ||||| Sbjct 8002 TATCCCTGTGGTAACTTTTTTGACACCTCTAGCTTCAAATCTCGAAGGTCTAAAAGATCG 8061 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||| |||||| || |||||| Sbjct 8062 ATAGGCCACGCTTTCACAATTCGTATTC 8089 Score = 156 bits (172), Expect = 7e-36 Identities = 101/111 (91%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 |||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||| Sbjct 28559 ACGCTTAGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTATCTTCA 28618 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| ||| || |||||||||||||||||||| ||||||||||| |||||| Sbjct 28619 AATCCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCATGGTTCGTATTC 28669 >seq361 Length=4861392 Score = 333 bits (368), Expect = 5e-89 Identities = 251/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||| ||||| | || | ||| | | |||||||||||||||||||||||||||||| Sbjct 1967561 TACTAAGTTGAATTCCTATCGTGGC-ATGTTCATCAGTAGGGTAAAACTAACCTGTCTCA 1967503 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || ||| ||| ||||||||||||||||||| |||||||||| |||||| ||| ||| Sbjct 1967502 CGATTGTCAAAATCCAGCTCACGTTCCCTATTGATGGGTGAACAGTCCAACACTTGGCGA 1967443 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| |||| || ||| |||||||| |||| || ||| ||||||||||||||||| Sbjct 1967442 ATTCTACTTCACAATTATATGAAGAGCCACCATCAAATGATATAAAAGCAACGTCGCTAT 1967383 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | Sbjct 1967382 GAACGCTTGGCTGCCACAAGCTAGTTATCCCTGTGGTAACTTTTCTAACACCTCTAGCTT 1967323 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||| |||| || ||||| |||||||||||||||||||| |||| ||||||| Sbjct 1967322 CAAATCTCGAAGGTTTAAAGAATCGATAGGCCACACTTTCACGGTTCGTATTCA 1967269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854350906176