Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5746 183 6e-44 seq2963 141 2e-31 seq5450 138 2e-30 seq18 131 3e-28 seq21 125 1e-26 seq453 120 6e-25 seq180 116 7e-24 seq3001 102 2e-19 seq428 95.1 2e-17 seq438 77.0 6e-12 seq385 77.0 6e-12 seq11 73.4 8e-11 >seq5746 Length=162686 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 113795 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 113854 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 113855 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 113913 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 113914 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 113973 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 113974 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 114023 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 139862 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 139803 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 139802 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 139744 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 139743 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 139684 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 139683 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 139634 >seq2963 Length=139738 Score = 141 bits (156), Expect = 2e-31 Identities = 174/234 (74%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 103884 GGGACAGTCTCAGATAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 103825 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAA----CCATGCGCACAGTGCAAAGGCAAAAG 226 | ||| | | |||| | | ||| | |||| || |||||||||||| ||| Sbjct 103824 GTGCAATGGTTTCCTCGGGACAAACGGAGATTGACCAT-CG---AGTGCAAAGGCAGAAG 103769 Query 227 GGTGTTTGACT-GCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCG 285 || | |||| | || | |||| | ||| || ||||||||||||||| |||| ||||||| Sbjct 103768 GGAGCTTGATTTGCAAGACCCACCCGTCGAGTAGGGACGAAAGTCGGCCTTAGTGATCCG 103709 Query 286 GCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| || |||||||| || |||||||| ||| || |||||| Sbjct 103708 ACGGTGTCGAGTGGAAGGGTCGTCGCTCAACAGATAAAAGTTACTCTAGGGATA 103655 >seq5450 Length=8972411 Score = 138 bits (152), Expect = 2e-30 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| ||||||||| | | ||||| | |||| | || || | || Sbjct 5799246 GCCTCCCAAAAAGTAACGGATGTGTGCAAAGGTTTCCTCGGGCCAGACAGAGATTG-GCC 5799304 Query 208 CACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | || ||||||| ||||||||| |||| ||| | |||| | ||| |||||||| ||| Sbjct 5799305 CTCAAGTGCAAATGCAAAAGGGAACTTGATTGCAAGACCCACCCGTCAAGCAGGGAAGAA 5799364 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 ||| || |||||||||||| |||||| || ||||||||||||||||| | ||||||||| Sbjct 5799365 AGTTGGCCTTAATGATCCGACGGTGCCGAGTGGAACGGCCGTCGCTCAATGGATAAAAGT 5799424 Query 327 TACCCTGGGGATA 339 ||| || |||||| Sbjct 5799425 TACTCTAGGGATA 5799437 >seq18 Length=4329289 Score = 131 bits (144), Expect = 3e-28 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||| | ||||||| || ||||||| |||| |||||| Sbjct 3004419 GGGACAGTCTCAGGTAGACAGTATCTATGGGGCGTAGGCTTCCCAAAAGGTAATGGAGGC 3004478 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | |||| | ||| || ||| ||| | || | | |||||||| ||||||||| Sbjct 3004479 GTGCAAACGTTTCCTTAGGCCGGACGGAGATTG-GCCCTCGAGTGCAAACGCAAAAGGGA 3004537 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | || ||||||||||||||| || |||| ||| |||||| Sbjct 3004538 GCTTGACTGCAAGACCCACCTATCGAGCAGGGACGAAAGTTGGCCTTAGCGATACGGCGG 3004597 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 |||||| ||||| || |||||||| | |||||| || Sbjct 3004598 TGCTGAGTGGAAGGGTCGTCGCTCAAGGGATAACAG 3004633 >seq21 Length=3941259 Score = 125 bits (138), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| || | |||||||| |||| | |||||||||| ||||| ||||| Sbjct 1637348 GACAGTTTCCGGTAGGCAGTTTCTATGGGACATAGGCCTCCCAAAATGTAACAGAGGCCT 1637289 Query 173 CCAAAGATACCCTC-AGCTTG---GATGGAAACCATGCGCACAGTGCAAAGGCA-AAAGG 227 ||||| | |||| |||| | |||| |||| |||||||||| | ||||| Sbjct 1637288 GCAAAGGTTTCCTCGAGCTGGACAGATGTTGGCCATTG----AGTGCAAAGGAAGAAAGG 1637233 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | |||||||| | |||| | ||| |||| ||||||||||||| |||||||||||| | Sbjct 1637232 AAGCTTGACTGCAAGACCCACCCGTCGAGCAAGGACGAAAGTCGGCCTTAATGATCCGAC 1637173 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| || ||||| | |||||||| ||| ||||||| ||| || ||||| Sbjct 1637172 GATGCCGAGTGGAAGTGTCGTCGCTCAACGCATAAAAGTTACTCTAAGGATA 1637121 Score = 93.3 bits (102), Expect = 8e-17 Identities = 138/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 |||||| | |||||| ||||| |||||||||| |||| | ||| | |||||| Sbjct 2007098 TGGGGCTGAGGCCTCCAAAAGA-TAACGGAGGCATGTAAAGGTTTTCTCGGGCCGGATGG 2007040 Query 198 AAA----CCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTC 253 | | | || || |||||||||||| ||||| | |||||||| | |||| | | Sbjct 2007039 AGATTGGCTAT-CG---AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCATG 2006984 Query 254 TAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTC 313 ||||||||| |||||| |||| || || | ||||| || || || ||| ||||||| Sbjct 2006983 GAGCAGGGACAAAAGTCATCCTTAGTGGTCGGATGGTGCCGAGTGAAAGGGCTGTCGCTC 2006924 Query 314 GACGGATAAAAG 325 || |||||||| Sbjct 2006923 AACAGATAAAAG 2006912 >seq453 Length=4878105 Score = 120 bits (132), Expect = 6e-25 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| ||| | |||||| |||||| |||| | ||| |||||| | | Sbjct 704238 GGGACAGTCTCATGTAGACAGTTTTTATGGGGCATAGGCCTTCTAAAAGGTAACGAAAGA 704179 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||||| |||| | |||| ||| | || | | |||||||||| | ||||| Sbjct 704178 GTGCAAAGATTTCCTCGGGCTGGACGGAGATTG-GCCCTCGAGTGCAAAGGTAGAAGGGA 704120 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | || | |||||||||||||| | |||| ||||| | ||| Sbjct 704119 GCTTGACTGCAAGACCCACCTATCGAACAGGGACGAAAGTCAGCCTTAGTGATCTGACGG 704060 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || | || ||| ||||||| || ||||||| ||| ||||||||| Sbjct 704059 TGCCGAGTAAAAGGGCTGTCGCTCAACAAATAAAAGTTACTCTGGGGATA 704010 >seq180 Length=4791638 Score = 116 bits (128), Expect = 7e-24 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGC 189 ||||| ||||||| |||||||||| ||||| ||||| ||||| | |||| | Sbjct 3031029 AGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACAGAGGCATGCAAAGGTTTCCTCGGG 3031088 Query 190 TTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTC 248 ||| ||| | || | || ||||||||||| ||||| | |||||||| | |||| | Sbjct 3031089 CCGGACGGAGATTG-GCCCTCAAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCAC 3031147 Query 249 AAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGT 308 || ||||||||| ||||| || |||| ||||||| ||||| || ||||| |||| | Sbjct 3031148 CCGTGGAGCAGGGACAAAAGTTGGCCTTAGTGATCCGATGGTGCCGAGTGGAAGGGCCAT 3031207 Query 309 CGCTCGACGGATA 321 | ||| ||||||| Sbjct 3031208 CACTCAACGGATA 3031220 >seq3001 Length=2574463 Score = 102 bits (112), Expect = 2e-19 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||| | ||||| | |||||||| | |||| | | |||| ||||||||||| Sbjct 672358 AGTGCAAAGGTAGAAGGGAGCTTGACTGCAAGACCCACCCACCGAGCAAGGACGAAAGTC 672299 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 | |||| | ||||| ||||| | |||| ||| ||||||| ||||||||||| ||| Sbjct 672298 AGCCTTACTAATCCGATGGTGCCCAGCGGAAGGGCAGTCGCTCAACGGATAAAAGTTACT 672239 Query 331 CTGGGGATA 339 || |||||| Sbjct 672238 CTAGGGATA 672230 >seq428 Length=6134549 Score = 95.1 bits (104), Expect = 2e-17 Identities = 111/145 (77%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATG 196 ||||||| |||||||||| |||| |||||| ||||| | | || ||| ||||| Sbjct 5766286 TGGGGCGTAGGCCTCCCAAAAGGTAATGGAGGCATGCAAAGGTTTCTTCGAGCC-GGATG 5766344 Query 197 GAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255 || | || | | |||||||||||| ||||| |||||||||| | |||| || ||| | Sbjct 5766345 GAGATTG-GCCCGCGAGTGCAAAGGCAGAAGGGAGTTTGACTGCAATACCCACATGTCGA 5766403 Query 256 GCAGGGACGAAAGTCGGGCTTAATG 280 ||| ||||||||||||| |||| || Sbjct 5766404 GCAAGGACGAAAGTCGGCCTTAGTG 5766428 >seq438 Length=5379737 Score = 77.0 bits (84), Expect = 6e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 || ||| ||||| || |||||| || |||| ||||||| ||||| | || |||||||| Sbjct 3360888 CACGTCGAGCAGCGATGAAAGTTGGCCTTAGTGATCCGATGGTGCCAAGTGAAACGGCCG 3360947 Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGA 337 || ||| ||||||||||| || || |||| Sbjct 3360948 TCACTCAACGGATAAAAGTTATTCTAGGGA 3360977 >seq385 Length=5744721 Score = 77.0 bits (84), Expect = 6e-12 Identities = 71/89 (80%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 251 GTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCG 310 ||| || |||||||||||| || ||| |||| || || ||| || ||||| || |||| Sbjct 2421582 GTCAAGAAGGGACGAAAGTTGGCCTT--TGATTCGACGATGCCGAGTGGAAGGGTTGTCG 2421639 Query 311 CTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| ||||||||||| ||| || |||||| Sbjct 2421640 CTCAACGGATAAAAGTTACTCTAGGGATA 2421668 >seq11 Length=4280439 Score = 73.4 bits (80), Expect = 8e-11 Identities = 147/216 (68%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||| || ||||| ||||| |||||||||||||| | | ||| || || Sbjct 1893461 GGGTAGTTTATCTAAGGCGGATGCCTCTTCAAGAGTAACGGAGGTGTACGAAGGTAGGCT 1893520 Query 186 CA-GCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 || ||| ||| |||| || || | || || | ||| ||| |||||| || | Sbjct 1893521 CAAGCTAAGATT------ATGCTCATGAGCGTAATGGTATAAGCATGTCTGACTGTGAGA 1893574 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 | ||| | ||| |||||||||||| | || |||| ||| || | | ||||| | Sbjct 1893575 TAGGCTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATTCGGGAGTCCCGTGTGGAAGG 1893634 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || |||||| | |||| |||| ||| | |||||| Sbjct 1893635 GCTCTCGCTCAATGGATCAAAGGTACACCAGGGATA 1893670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982343551296