Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1810 181 1e-43 seq571 77.0 4e-12 seq4452 75.2 1e-11 seq2686 75.2 1e-11 >seq1810 Length=2008 Score = 181 bits (200), Expect = 1e-43 Identities = 159/193 (82%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1157 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCG 1216 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 1217 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCAGCA 1276 Query 126 CA-CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGC 182 || ||| |||| ||||| || || ||| ||| ||| | || |||||| ||| Sbjct 1277 CACCCAGTGAAGGGCAT-GAGGTTCCCCAGAAGGAAAGGCCCGGCCGGACCAGTACACGC 1335 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 1336 GGTGAGGCGGACC 1348 >seq571 Length=440730 Score = 77.0 bits (84), Expect = 4e-12 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| | || || | | | |||| |||||||||||||||||| | ||| Sbjct 363990 CCAACACAATAGGACCAAAC-TCTTGTGTTGTTATCCCATGCTAATGTATTCGGAGTGTA 363932 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 || |||||||| ||||||||||| |||| |||| || |||| Sbjct 363931 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAATGGTGCTGG 363888 >seq4452 Length=3630538 Score = 75.2 bits (82), Expect = 1e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||| | | |||| |||||||||||||||| | || || Sbjct 3434966 CCAACACAATAGGACCGAAA-TCCTGTGATGTTATCCCATGCTAATGTATTCAGAGCTTA 3434908 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||| ||||||||||| |||| |||| Sbjct 3434907 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 3434873 >seq2686 Length=2812123 Score = 75.2 bits (82), Expect = 1e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||| | | |||| |||||||||||||||| | ||||| Sbjct 12147 CCAACACAATAGGACCGAAA-TCCTGTGATGTTATCCCATGCTAATGTATTCAGAGCGTA 12205 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || || ||||| ||||||||||| |||| |||| Sbjct 12206 GGCTTGTTTTGAGCACTCTAATTTCTTCAAAGTAA 12240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595166868564