Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq5746 123 2e-26 seq2710 102 7e-20 seq3275 95.1 1e-17 seq541 95.1 1e-17 seq2801 87.8 1e-15 seq2430 87.8 1e-15 seq755 84.2 2e-14 seq1750 80.6 2e-13 seq2428 78.8 8e-13 seq653 75.2 9e-12 seq428 75.2 9e-12 >seq5746 Length=162686 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | || || ||| ||||||| ||||||||| Sbjct 108883 CGAGTTGCAGCCTGCAATCCGAACTGAGG-ACGGGTTTTGGAGTTAGCTCACCCTCGCGG 108825 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 108824 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 108765 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 108764 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 108725 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | || || ||| ||||||| ||||||||| Sbjct 144774 CGAGTTGCAGCCTGCAATCCGAACTGAGG-ACGGGTTTTGGAGTTAGCTCACCCTCGCGG 144832 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 144833 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 144892 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 144893 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 144932 >seq2710 Length=11522362 Score = 102 bits (112), Expect = 7e-20 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| || ||||||| ||| | || | | ||| ||| ||||||| |||||| || Sbjct 2850770 GAGTTGCAGTCTGCAATCCGAACTGAGGACA-AGTTTTTGGAGTTAGCTCACCCTCGGGG 2850712 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || ||| ||| ||| |||||||| ||||||| || |||| ||| ||| Sbjct 2850711 ATTTGCGACCCATTGTCCTGGCCATTGTAGCACGTGTGTCCCCAAGGGCATATGGGGCAT 2850652 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||| |||||| ||||||||||||| || |||| Sbjct 2850651 GATGACTTGACATCATCCTCACCTTCCTCCGGCTTATCAC 2850612 >seq3275 Length=3666727 Score = 95.1 bits (104), Expect = 1e-17 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||| || || ||||||| ||| | | ||| ||| |||||||| ||||||| || Sbjct 215315 GAGTTACAACCTGCAATCCGAACTGAGGACGAGTTTTTGGAATTAGCTCACCCTCGCAGG 215256 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| || | ||| ||||| || || |||| |||| ||||||| |||| Sbjct 215255 ATCGCGACCTT-TGTCCTGGCCATTATAGCACATGTGTCGCCCAGGGCATAAGGCACATG 215197 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| || |||| Sbjct 215196 ATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 215158 >seq541 Length=823498 Score = 95.1 bits (104), Expect = 1e-17 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||||||| |||||||| ||| | | ||||| | ||| |||| ||| | | Sbjct 188502 GAGTTGCAGAGAACAATCCGAACTTAGGCAATCTTTCAGA-ATTCGCTCTGCCTTACAGC 188444 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | | ||| |||| | |||||||| ||||||| | || |||||||||||||||| Sbjct 188443 CTTCCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGTCCAACCCATAAGGGCCATG 188384 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||| || | |||| Sbjct 188383 CAAACTTGACGTCATCCCCACCTTCCTCTAGTATATCAC 188345 >seq2801 Length=2595379 Score = 87.8 bits (96), Expect = 1e-15 Identities = 96/126 (76%), Gaps = 5/126 (4%) Strand=Plus/Plus Query 37 TTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGT 96 || ||| ||||||| |||||| || | | | |||| ||| | ||||||||| |||| Sbjct 1291637 TTTTGGAGTTAGCTCACCCTCGTGGAATCGTGACCCTTTGTCTTGACCATTGTAGCACGT 1291696 Query 97 GTGAAGCCCTACC-CATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 | | |||| |||||||| ||||| ||||||| ||||| ||||||||||||||| | Sbjct 1291697 GCG----CCTAGGGCATAAGGGGCATGATGACTTGATGTCATACCCACCTTCCTCCGGCT 1291752 Query 156 TGTCAC 161 | |||| Sbjct 1291753 TATCAC 1291758 >seq2430 Length=3064904 Score = 87.8 bits (96), Expect = 1e-15 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||| | ||| | | ||||| | ||| | ||| |||| | | Sbjct 108845 CGAGTTGCAGAGAACAATCTGAACTGAGGCAATCTTTCCAG-ATTCGATCCACCTCACAG 108903 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | ||||| || ||||||| ||||| ||||||||||| || Sbjct 108904 TCTTGCTTCCCATTGTAATTGCCATTATAGCACGTGTGTAGCCCAGCCCATAAGGGCTAT 108963 Query 122 GAGGACTTGACGTCATCCCCACC 144 | |||||||||||||||||||| Sbjct 108964 GCAGACTTGACGTCATCCCCACC 108986 >seq755 Length=6207899 Score = 84.2 bits (92), Expect = 2e-14 Identities = 116/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||| || ||||| | || | ||| | ||| || ||||||| |||||| | Sbjct 1777933 GAGTTGCAACCTTCAATCTGATCTGAGGATGGATTTT--GGAGTTAGCTCACCCTCGTAG 1777876 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | | |||| ||| |||||||| ||||||| ||| |||||||| ||| Sbjct 1777875 GATCGTGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCTAGGGCATAAGGGGCAT 1777816 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||| ||| ||| |||| Sbjct 1777815 GATGACTTGACGTCATCCTCACCTTCTGCCGATTTATCAC 1777776 >seq1750 Length=7204098 Score = 80.6 bits (88), Expect = 2e-13 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 60 GGGTTGGCGGCCCTCTGTA-TGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGC 118 ||| | ||| |||| ||| ||| |||||||| ||||||| | || | |||||||| Sbjct 334887 GGGATCGCGACCCTTTGTCCTGT-CCATTGTAGCACGTGTGTCGGCCAAGGCATAAGGGG 334945 Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || || |||||||| |||||| ||||||||||||| || |||| Sbjct 334946 CACGATGACTTGACATCATCCTCACCTTCCTCCGGCTTATCAC 334988 >seq2428 Length=3105707 Score = 78.8 bits (86), Expect = 8e-13 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| || |||| || | | |||| ||| ||||||||| | | Sbjct 2560651 TTTTTGGAGTTAGCTCACCTTCGCAGGATCACAACCCTTTGTCCTAACCATTGTAGCATG 2560710 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| ||||||| ||||| |||||||| |||||| ||||||||||| | | Sbjct 2560711 TGTGTCGCCCAGGGTATAAGGGGCATGATGACTTGACATCATCCTCACCTTCCTCCAGCT 2560770 Query 156 TGTCAC 161 | |||| Sbjct 2560771 TATCAC 2560776 >seq653 Length=6726419 Score = 75.2 bits (82), Expect = 9e-12 Identities = 82/108 (76%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 55 CTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAA 114 |||||||| | ||| |||| ||| |||||||| || |||| |||| ||||| Sbjct 2145506 CTCGCGGGATTGCGACCCTTTGTCCCGGCCATTGTAGCACATGTGTCGCCCAGGGCATAA 2145565 Query 115 GGGC-CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||| ||| ||||||||||| ||||||||||||| | |||| Sbjct 2145566 GGGAGCATGATGACATGACGTCATCCTCACCTTCCTCCGGCGTATCAC 2145613 >seq428 Length=6134549 Score = 75.2 bits (82), Expect = 9e-12 Identities = 114/160 (71%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||| | ||| | || || ||| ||||||| ||| || Sbjct 5456090 CGAGTTGCAGCCTACAATCTGAACTGAGG-ACGGGTTTTGGAGTTAGCTCACCCATAAGG 5456032 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| | | ||| |||||||| ||||||| |||| ||||| | | || Sbjct 5456031 GATCGCGACAGTTTGTCCCGGCCATTGTAGCACGTGTGTTGCCCAGGGCATAAAGTC-AT 5455973 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||| |||||| || || |||| Sbjct 5455972 GATGACTTGACGTCATCCTCACATTCCTCTGGCTTATCAC 5455933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415976843620