Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq5746 163 5e-38 seq1750 122 1e-25 seq653 120 5e-25 seq2428 109 9e-22 seq755 104 4e-20 seq428 104 4e-20 seq5571 87.8 3e-15 seq510 87.8 3e-15 seq4328 78.8 2e-12 seq2801 73.4 7e-11 >seq5746 Length=162686 Score = 163 bits (180), Expect = 5e-38 Identities = 204/280 (73%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 108331 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 108272 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 108271 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 108212 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 108211 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 108152 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 108151 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 108092 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||||||||| ||||||||| ||||||||||| Sbjct 108091 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTC 108052 Score = 163 bits (180), Expect = 5e-38 Identities = 204/280 (73%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 145326 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 145385 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 145386 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 145445 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 145446 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 145505 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 145506 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 145565 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||||||||| ||||||||| ||||||||||| Sbjct 145566 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTC 145605 >seq1750 Length=7204098 Score = 122 bits (134), Expect = 1e-25 Identities = 198/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| |||| ||||| | | |||||| || |||| | |||||||| | Sbjct 335383 GCTTTCGTCTCTCAATTTCAGTGTCAGCCCAGCAGAGTGCTTTCGTCGTTGGTGTTCTTT 335442 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | |||| || Sbjct 335443 CCAATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCATACTCCAG 335502 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 ||||| | || | ||||||||||| | ||| | |||||| Sbjct 335503 CTTGGTAGTTTTCACCGCTTGTCCAGGGTTGAGCCCTGGGATTTGATGGTGGACTTGAAA 335562 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | ||||| |||||| | ||||||||| |||||| ||| || ||| Sbjct 335563 AGCCACCTACAGACGTTTTACGCCCAATCATTCCGGATAATGCTTGCATCCTCTGTCTTA 335622 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||| ||||||||| ||||||||||||| || Sbjct 335623 TCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 335667 >seq653 Length=6726419 Score = 120 bits (132), Expect = 5e-25 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || || ||| |||||||| | || |||||||||||||||||| ||| | |||||| Sbjct 2146070 GCTTTTGCCGTTGGTGTTCTTTTCGATCTCTACGCATTTCACCGCTCCACTGGAAATTCC 2146129 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCA 162 | || || | |||| | |||||| | || | ||| ||||||||||| Sbjct 2146130 CTCTACCCCTACCATACTCCAACTTGGTAGTTTCCACCGCTTGTCTA-GGGTTGAGCCCT 2146188 Query 163 TAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGA 222 | | ||| || | |||||| || |||||| |||||| |||||| | |||||| Sbjct 2146189 TGGATTTGACCGCGGACTTGAAAAGCCACCTACATAAGCTTTACGCCCAATCATTCCGGA 2146248 Query 223 TAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||| ||| || |||||||||||||| |||| ||||| ||| |||||||| Sbjct 2146249 TAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTAGCACAGAGTTATCCGATGCTTATTC 2146308 Query 283 CTC 285 ||| Sbjct 2146309 CTC 2146311 >seq2428 Length=3105707 Score = 109 bits (120), Expect = 9e-22 Identities = 186/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 |||| | |||| | | |||||| || |||||| |||| ||| | | || |||| Sbjct 2561179 CTCAATGCCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTTTTCTTTCTGATCTCTA 2561238 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||||||||||| ||| | |||| | || | || | |||| || |||| Sbjct 2561239 CGCATTTCACCGCTCCACTGGAAATTACCTCTGTCCCTACCATACTCTAGCTTGGTAGTT 2561298 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || || | | ||||||||||| | ||| || | |||||| || |||| Sbjct 2561299 TCCAACACCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTAT 2561358 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | | ||||||||||||| | |||| ||||||||||| | | || ||||||||||||| Sbjct 2561359 AGACGCTTTACACCCAATCATTCCGAATAACGCTTGCATCTTCTGTCTTACCGCGGCTGC 2561418 Query 256 TGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | |||| |||||| || || |||||||| Sbjct 2561419 TTGCACAGAGTTAGTCGGTGCGTATTCCTC 2561448 >seq755 Length=6207899 Score = 104 bits (114), Expect = 4e-20 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | |||||| || |||||| | |||||| ||| Sbjct 5163151 GGGTTGAGCCCTGGGATTTGACGACGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 5163210 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | ||| |||||||||||| ||| || ||||| ||||||||||||| ||||||| Sbjct 5163211 AATCATTCCAGATAACGCTTGCATCCTCTGTCTTACCACGGCTGCTGGCACAGAGTTAGC 5163270 Query 271 CGTGGCTTATTCCTC 285 || ||||||||||| Sbjct 5163271 CGATGCTTATTCCTC 5163285 Score = 86.0 bits (94), Expect = 1e-14 Identities = 165/242 (68%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || || | || |||||||| | | || ||||||||||||| | || ||| || |||||| Sbjct 1777506 GCTTTTGTCATTGGTGTTCTTTCCGATCTCTACGCATTTCATCCCTCCAC-CGAAATTCC 1777448 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 | || | | | |||| || |||||| | || | || |||||||| Sbjct 1777447 CTCTACCCTTACTGTACTCCAGCTTGGTAGTTTCCACCGCCTGTACAGGTTTGAGCCCTA 1777388 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| ||| | |||||| || |||||| ||| || |||||| | ||| ||| Sbjct 1777387 GGATTTTACAGCAGACTTGAAAAGCCACCTACAAATGCTTCACGCCCAATCATTCCAGAT 1777328 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 || |||||| || || |||| |||||||| |||| ||||||||| |||||||| Sbjct 1777327 AATGCTTGCATTCTTTGTCTTACTTTGGCTGCTGACACGAAGTTAGCCGATACTTATTCC 1777268 Query 284 TC 285 || Sbjct 1777267 TC 1777266 >seq428 Length=6134549 Score = 104 bits (114), Expect = 4e-20 Identities = 191/279 (68%), Gaps = 1/279 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| || ||||| | Sbjct 5455540 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTG-TGTTCTTT 5455482 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||| |||||||||||| || |||||| || || | |||| || Sbjct 5455481 CTGATCTCTACTCATTTCACCGCTCTACCGAAAATTCCCTCCACCCCTATCGTACTCCAG 5455422 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | | | ||||||||||| | ||| || | |||||| Sbjct 5455421 CTTGGTAGTTTCCATCACCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 5455362 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| ||||| | ||| ||||| |||||| ||| || ||| Sbjct 5455361 AGCCACCTACAAACGCTTTACGCCCAAGCATTCCAGATAATGCTTGCATCCTCTGTCTTA 5455302 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCT 284 ||| |||||||||||| ||||||||| |||||||||| Sbjct 5455301 CCGTGGCTGCTGGCACAAAGTTAGCCGATGCTTATTCCT 5455263 >seq5571 Length=10537363 Score = 87.8 bits (96), Expect = 3e-15 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 47 TTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGAT 106 |||||| |||||||| | | || ||||| ||||||||||| ||| | ||||| Sbjct 1763716 TTCGCCGTTGGTGTTCTTTCCGATCTCTACATATTTCACCGCTCCACCAGAAATTCTCTC 1763657 Query 107 TGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT 166 |||| || | |||| || |||||| | || | |||||||||| |||| Sbjct 1763656 TGCCCCTACCATACTCTAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCC-ATAGG 1763598 Query 167 -TTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAA 225 ||| || || |||||| || |||||| | |||||| |||||| | || |||||| Sbjct 1763597 ATTTGACGTCGGACTTGAAAAGCCACCTACATACTCTTTACGCCCAATCATTCTGGATAA 1763538 Query 226 CGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | |||| || | || |||||| | ||| || || |||| || | ||||||||||| Sbjct 1763537 CATTTGCATCCGATGTCTTACCGGGACTGTTGACATAGAGTTTGCTGATGCTTATTCCTC 1763478 >seq510 Length=5090928 Score = 87.8 bits (96), Expect = 3e-15 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 132 AGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCG 190 |||||| | ||| | ||| ||||||||||| | ||| || | |||||| | Sbjct 1534581 AGTTTCCACCGCATGTCTA-GGGTTGAGCCCTGGGATTTGACGGCGGACTTGTAAAGCTA 1534639 Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 ||||||| ||||| |||||| | || |||||||||| || ||| || |||||||| Sbjct 1534640 CCTACACATGCTTTATGCCCAATCATTCGGGATAACGCTCGCATCCTCTGTCTTACCGCG 1534699 Query 251 GCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||||||| ||||||| | ||||||||||| Sbjct 1534700 ACTGCTGGCACAGAGTTAGCTGATGCTTATTCCTC 1534734 >seq4328 Length=92681 Score = 78.8 bits (86), Expect = 2e-12 Identities = 77/99 (78%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 190 GCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTG---CCACCTACGTATTAC 246 |||||| ||||| ||| |||| | | ||| ||||| |||| || || ||| ||| Sbjct 26011 GCCTACGTGCCCTGTACTCCCAGTCATTCCCAATAACACTTGGCCCCCCCCCCGTCTTAT 25952 Query 247 CGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 || ||||||||||||| ||||||||| ||||| |||||| Sbjct 25951 CGAGGCTGCTGGCACGGAGTTAGCCGAGGCTTCTTCCTC 25913 >seq2801 Length=2595379 Score = 73.4 bits (80), Expect = 7e-11 Identities = 88/120 (73%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 1711887 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 1711946 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 1711947 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 1712006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828753865366