Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1810 288 1e-75 seq4452 132 5e-29 seq2686 132 5e-29 seq571 118 1e-24 seq361 116 4e-24 seq3199 113 5e-23 seq1552 98.7 1e-18 >seq1810 Length=2008 Score = 288 bits (318), Expect = 1e-75 Identities = 179/191 (94%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1270 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 1211 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1210 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 1152 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| |||||||||||| |||| ||||||||||| Sbjct 1151 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTC 1092 Query 181 TTGGATTTATT 191 ||||||| ||| Sbjct 1091 TTGGATTGATT 1081 >seq4452 Length=3630538 Score = 132 bits (146), Expect = 5e-29 Identities = 139/178 (78%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| ||||| Sbjct 3434873 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTAAGCTCTGAATACATTAGCATGGG 3434932 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATGATA 131 |||| | | |||| | |||| ||||| ||| || ||| || | | |||||||| Sbjct 3434933 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGAGATCGGA--GTAATGATT 3434989 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 || | ||| ||||||||| | |||||| || |||| |||||||||||||||||||| Sbjct 3434990 AAGAGGGACAGTCGGGGGCATTAGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 3435047 Score = 96.9 bits (106), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAA-TACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| ||||| || ||||||| |||| Sbjct 3410927 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTAAATACATTAGCATGAG 3410868 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | || || |||||||| | Sbjct 3410867 ATAACATCATAGGATTT-CGGTCCTATTGTGTTGGGCTTCGTGATCGGA-GTAATGATTA 3410810 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176 | | ||| || | |||| | ||||| || |||||||||||| Sbjct 3410809 AGAGGGACAGACAGGGGCATTCGTATTTCATAGTCAAAGGTGAA 3410766 >seq2686 Length=2812123 Score = 132 bits (146), Expect = 5e-29 Identities = 141/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAA-TACATTACCA 68 || ||||||||||| ||||||||| | |||||||| |||| ||||| || ||||||| || Sbjct 535 ACCTTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTAAATACATTAGCA 476 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | | | || | | || ||||| ||| || | | ||| | |||||| Sbjct 475 TGGGATAACATCACATGATTT-CTGTCCTATTCTGTTGGCCTTTGGGATCAGA-GTAATG 418 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| ||||||||||||||||||||||||||| Sbjct 417 ATTAAGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAAAGGTGAAATTCTTGGATTT 358 Query 189 AT 190 || Sbjct 357 AT 356 Score = 116 bits (128), Expect = 4e-24 Identities = 136/179 (76%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | ||||| || |||| |||| |||||||||| ||||| Sbjct 12240 TTACTTTGAAGAAATTAGAGTGCTCAAAACAAGCCTACGCTCTGAATACATTAGCATGGG 12181 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATGATA 131 |||| | | |||| | |||| ||||| ||| || ||| || | | ||||||| Sbjct 12180 ATAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGAGATCGGAT--TAATGATT 12124 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||| ||||||||| | ||||| || |||| ||||||||||||| ||||||| Sbjct 12123 AAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTTGATTTAT 12065 Score = 116 bits (128), Expect = 4e-24 Identities = 136/179 (76%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| ||| |||||||||| ||||| Sbjct 33018 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTATGAATACATTAGCATGGG 32959 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCGTAATGATA 131 | || | | |||| | |||| ||||| ||| || ||| || | | |||||||| Sbjct 32958 AAAACATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGAGATCGGA--GTAATGATT 32902 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||| ||| ||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 32901 AAGAGGGACAGTTGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 32843 Score = 102 bits (112), Expect = 8e-20 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| ||||| Sbjct 14690 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCATGGG 14631 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | | | | | | || ||||| ||| || | | ||| || |||||||| | Sbjct 14630 ATAACATCACAATATTT-CAGTCCTATTGTGTTGGCCTTTGGGATCGGA-GTAATGATTA 14573 Query 133 ATACGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | |||| || || | |||||| |||||||||||||| Sbjct 14572 AGAGGGACAGTCGGGGGACATTCGTATGTCATAGTTAGAGGTGACATTCTTGGATTTAT 14514 >seq571 Length=440730 Score = 118 bits (130), Expect = 1e-24 Identities = 142/188 (76%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACAT 63 |||| || |||||||||| ||||||||| | |||||||| |||| ||| |||||||| Sbjct 363888 CCAGCACCATTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCCGAATACAT 363947 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCC 122 || ||||| |||| | | | || || ||| ||||| ||| || ||| || | | Sbjct 363948 TAGCATGGGATAACAACACAAGA-GTTTGGTCCTATTGTGTTGGCCTTCGAGATCGGA-- 364004 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| || | ||||||| ||||| | |||| || |||| ||||||||||||| Sbjct 364005 GTAATGATTAAGAGGGATAGTTGGGGGCATTCTTATTTCATAGTCAGAGGTGAAATTCTT 364064 Query 183 GGATTTAT 190 |||||||| Sbjct 364065 GGATTTAT 364072 Score = 104 bits (114), Expect = 2e-20 Identities = 132/178 (74%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||||||||||||| ||||||| | |||| |||| |||||| ||| ||||| Sbjct 341501 TTACTTTGAAAAAATTAGAGTATTCAAAGAAAGCCTACGCTCTGAATACGTTAGCATGGG 341560 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | | | || | |||||| ||| ||| | | || | | |||||||| | Sbjct 341561 ATAACATCACAAGATTT-CGGTTCCATTGTGTTGACCTTCAGAATCAAA-GTAATGATTA 341618 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | |||| |||||||| | ||||| || || | ||||||||||||||||||||| Sbjct 341619 AGACGGGCAGTCGGGGTCATTTGTATTTCATAGTAAGAGGTGAAATTCTTGGATTTAT 341676 Score = 82.4 bits (90), Expect = 8e-14 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||| ||||| |||| |||| | |||||||| ||| | || |||||||||| ||||| Sbjct 352050 TTACATTGAAGAAATAAGAGTGCTCAAAGCAAGCCGACGATCTGAATACATTAGCATGGG 352109 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | | | || | || |||| ||| | ||| ||| || | ||||||| | Sbjct 352110 ATAACATCACAAGATTT-CGAGCATATTGTGTTGACTTCG-GGATCGGC-GTAATGAATA 352166 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | |||| || ||| ||| ||||||||||||||||| Sbjct 352167 AGAGGGACAGTCGGGGGCATTCATATTTCATAGTCCGAGGGGAAATTCTTGGATTTAT 352224 >seq361 Length=4861392 Score = 116 bits (128), Expect = 4e-24 Identities = 135/178 (76%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 || ||||||| ||||||||| | |||||||| |||| ||| |||||||||| ||||| Sbjct 1962931 TTCCTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACCCTCTGAATACATTAGCATGGG 1962990 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | | | || | || | ||||| ||| || | | ||| || |||||||| | Sbjct 1962991 ATAACATCACAAGATTT-CGATCCTATTGTGTTGGCCTGTGGGATCGGA-GTAATGATTA 1963048 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | |||||| || |||| ||||||||||||| ||||||| Sbjct 1963049 AGAGGGACAGTCGGGGGCATTCGTATTCCATAGTCAGAGGTGAAATTCTTTGATTTAT 1963106 Score = 107 bits (118), Expect = 2e-21 Identities = 139/187 (74%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATT 64 ||| ||| |||||||||| ||||||||| | |||||||| || | ||| |||||| | Sbjct 1975909 CAGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCGTAAGCTTTGAATACCAT 1975968 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TAGGTTTCTAGGACCGCCCG 123 | ||||| |||| | | | || | || | ||||| || ||| ||| || | | | Sbjct 1975969 AGCATGGGATAACATCACAAGATTT-CGTTCCTATTGTGGTAGCCTTCGAGATCAGA--G 1976025 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| || | ||| ||||||||| | ||||| || |||| |||||||||||||| Sbjct 1976026 TAATGATTAAGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTG 1976085 Query 184 GATTTAT 190 ||||||| Sbjct 1976086 GATTTAT 1976092 >seq3199 Length=2935351 Score = 113 bits (124), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| ||| |||||||||| ||| Sbjct 2517366 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGAATACATTAGTATGTG 2517307 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 ||| | | |||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 2517306 ATACCATCACAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 2517249 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 2517248 AGAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2517191 >seq1552 Length=8757819 Score = 98.7 bits (108), Expect = 1e-18 Identities = 135/184 (73%), Gaps = 10/184 (5%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| |||||||||| | || Sbjct 1836891 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGAATACATTAGCCAGGG 1836950 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | | || | |||| ||||| ||| || | ||| || |||||||| | Sbjct 1836951 ATAACATCACAGAT--TTCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 1837007 Query 133 ATACGGATAGTCGGGGGTGT---CA---GTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | ||| ||||||||| | || ||||| || ||| ||||||||||||||||| Sbjct 1837008 AGAGGGACAGTCGGGGGCATGGGCATTCGTATTTCATAATCAGAGGTGAAATTCTTGGAT 1837067 Query 187 TTAT 190 |||| Sbjct 1837068 TTAT 1837071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511971499840