Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq2467 78.8 9e-13 seq180 78.8 9e-13 >seq2467 Length=3104487 Score = 78.8 bits (86), Expect = 9e-13 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||| ||| | |||||||||| |||||| |||||||||||||||| |||||| ||| Sbjct 2289673 GTTTAGCAAGAGCCCTTCCATACAGAACTCCCGGATCACTATGACCGACTTTCGTCTCTG 2289732 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 |||| | ||| |||| ||| | || ||||||| ||||| Sbjct 2289733 TTCGACCAGTCTATCTCACAGGTAGGCAAGCTTATACCATT 2289773 >seq180 Length=4791638 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||| ||||||||||||| || | |||| |||||||||| | || |||| | |||| Sbjct 3031215 GTTGAGTGATGGCCCTTCCACTCGGCACCATCGGATCACTAAGGCCAACTTTTGTCCCTG 3031156 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||| | || ||| |||||||||| ||| |||| ||||||| Sbjct 3031155 CTCCACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 3031110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473573637352