Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq5746 123 5e-26 seq5434 122 2e-25 seq2801 104 5e-20 seq1750 100 6e-19 seq755 100 6e-19 seq5429 98.7 2e-18 seq2428 95.1 3e-17 seq741 95.1 3e-17 seq1954 93.3 9e-17 seq18 87.8 4e-15 seq2301 86.0 1e-14 seq510 86.0 1e-14 seq1199 75.2 2e-11 >seq5746 Length=162686 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | | ||| || | Sbjct 108087 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCGGATACCGTCAT-----------T 108039 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 108038 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 107986 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 107985 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 107926 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 107925 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 107866 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 107865 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 107827 Score = 123 bits (136), Expect = 5e-26 Identities = 194/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | | ||| || | Sbjct 145570 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCGGATACCGTCAT-----------T 145618 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 145619 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 145671 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 145672 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 145731 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 145732 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 145791 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 145792 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 145830 >seq5434 Length=3872 Score = 122 bits (134), Expect = 2e-25 Identities = 147/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 3818 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 3760 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 3759 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 3700 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 3699 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 3640 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 3639 GCCTCACCAACTAGCTAAT 3621 >seq2801 Length=2595379 Score = 104 bits (114), Expect = 5e-20 Identities = 143/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||||||| || | |||| | ||||| ||| || || || | ||| |||| || Sbjct 1292458 AAAAGAAGTACACGACCCGTGGG-CCTTCTACCTCCATGCGACATTGCTTCGTCAGGCTT 1292516 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| || || ||||||| Sbjct 1292517 TCGCCCATTGCAAAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGAGCCATGTCTCAA 1292576 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || ||||||| || | || || || | || ||| || || Sbjct 1292577 TCCCAGTGTGGTTGATTATCCTCTCGGACCAGCTCCTGATAGTCGCCTTGGTAAGCTATT 1292636 Query 261 ACCCCGCCTACTACCTAAT 279 || |||| |||||||||| Sbjct 1292637 GCCTCGCCAACTACCTAAT 1292655 >seq1750 Length=7204098 Score = 100 bits (110), Expect = 6e-19 Identities = 189/279 (68%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 335627 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACTGTCAT-----------T 335675 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| | || Sbjct 335676 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCGCGT 335728 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| ||| || ||| |||||| || ||| | ||||| |||||||||||| Sbjct 335729 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGAAAAATTTCCCACTGTTGCCTCCCGTAG 335788 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | ||||||| || | ||| || Sbjct 335789 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGACCAGCTACTAAT 335848 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || || || ||||| | || |||| ||||| Sbjct 335849 CATCGCCTTTGTAAGCTATTACCTCACCAACTAGCTAAT 335887 >seq755 Length=6207899 Score = 100 bits (110), Expect = 6e-19 Identities = 148/211 (70%), Gaps = 18/211 (9%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | | ||| || | Sbjct 5163250 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCGGATACCATCAT-----------T 5163298 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||||||| || | |||| | ||||| ||||||| | Sbjct 5163299 GC------TTCTTCTCCGGGACAAGAAGTTCACGACCCGTGGG-CCTTCTACCTTCACAC 5163351 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| ||||||| |||||||||| Sbjct 5163352 GGCATTGCTCCGTCAGGCTTTCGGCCATTGTGGAAAATTCCCCACTGCTACCTCCCGTAG 5163411 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGG 211 |||| ||| |||||||||||| ||| ||||| Sbjct 5163412 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGG 5163442 Score = 75.2 bits (82), Expect = 2e-11 Identities = 106/148 (72%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||||| || || | ||| | ||||| |||||| | | | ||| ||| || Sbjct 1777238 AAAAGAATTTCACGACTCGTGGG-CCTTCTACCTTCATGAGGCATTGCTCCGTCAAGCTT 1777180 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||| | ||||||||||||| |||||||| ||| |||||||| || Sbjct 1777179 TTGCCCATTGTGGAAAATTTCCCACTGCTGCCTCCTGTAGGAGTCTGGGCCGTGTCTTAG 1777120 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||| ||||| || | | ||||| || Sbjct 1777119 TCCCAGTGTGGCTGATCATTCTCTCGGA 1777092 >seq5429 Length=9263929 Score = 98.7 bits (108), Expect = 2e-18 Identities = 127/174 (73%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||||||| | || || ||||||| ||| ||| ||| ||||| |||| |||||||||| Sbjct 8286717 TTCATCCCCCGTGCAACATGGCTGGATCAAACTTGCGTTCATTGTCCAAGATTCCTCACT 8286658 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 |||||| | | | | ||| |||||||||||| ||| ||||| ||| | | |||||| Sbjct 8286657 GCTGCCACTAAAAAGTATCTGGGCCGTGTCTCAGTCCCAGTGTGGCGGATCATTCTCTCA 8286598 Query 227 GAACCCCTATCCATCGTAGGCTAGGT-GGGCCGTTACCCCGCCTACTACCTAAT 279 | | ||| ||| |||| ||| | || ||||| | || |||||||||| Sbjct 8286597 AATCGGCTAAAGATCTCGGGCTTGGTCGAGCTTTTACCTCACCAACTACCTAAT 8286544 >seq2428 Length=3105707 Score = 95.1 bits (104), Expect = 3e-17 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 || ||| || | |||||||||| | | |||||| | || | ||| ||||| | | || Sbjct 2561464 TTCTTCTCTGAGAAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGCGGCATTGC 2561522 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 | ||| || || |||||| || ||||| |||||||||||||||||||||| ||| Sbjct 2561523 TCCGTCAAGCTTTCCCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 2561582 Query 189 ACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTC 225 || ||||||| | ||| ||||| || | ||||||| Sbjct 2561583 GCCATGTCTCAATCCCAGTGTGGCTGATCATCCTCTC 2561619 >seq741 Length=6196301 Score = 95.1 bits (104), Expect = 3e-17 Identities = 126/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||||||| | || || ||||||| ||| ||| ||| ||||| |||| |||||||||| Sbjct 4100401 TTCATCCCCCGTGCAACATGGCTGGATCAAACTTACGTTCATTGTCCAAGATTCCTCACT 4100460 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 |||||| | | | || ||| |||||||||||| ||| ||||| ||| | | |||||| Sbjct 4100461 GCTGCCACTAAAAAGTGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCGGATCATTCTCTCA 4100520 Query 227 GAACCCCTATCCATCGTAGGCTAGGT-GGGCCGTTACCCCGCCTACTACCTAAT 279 | ||| ||| | || ||| | || ||||| | || |||||||||| Sbjct 4100521 AATTGGCTAAAGATCTCGGACTTGGTCGAGCTTTTACCTCACCAACTACCTAAT 4100574 >seq1954 Length=9499498 Score = 93.3 bits (102), Expect = 9e-17 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || | || ||||| ||| ||| || | || | |||| || Sbjct 9264751 AAAAGAAGTTCACGACCCAT-GAGCCTTCTACCTCCACATGACATTGCCG--TCAGGCTT 9264695 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||| ||||| | | | |||||||||| Sbjct 9264694 TCGCCCATTGCGGAA-ATTCCCCACTGCTGCCTCCCTTAGGATTCTAGGTCGTGTCTCAG 9264636 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 9264635 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 9264576 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 9264575 GCCTCACCAACTAGCTAAT 9264557 >seq18 Length=4329289 Score = 87.8 bits (96), Expect = 4e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| ||| || || ||||| |||||||||||||| || |||| ||| ||| Sbjct 2528286 TCAGGCTTTCGCCCACTGCGAAAAATTCCCCACTGCTGCCTCCCATAAGAGTCTGGGCCG 2528227 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| ||||||||| || | ||||||| || Sbjct 2528226 TGTCTCAGTCCCAATGTGGCTGAACATCCTCTCGGA 2528191 >seq2301 Length=11085951 Score = 86.0 bits (94), Expect = 1e-14 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 66 GTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTT 125 ||||| || || | |||||||||| || |||| | | ||||| ||| |||| | | Sbjct 9246645 GTTTTTTTTCCGAA-AAAAGAAGTTCACGATCCATGGG-CCTTCTACCTCCACGTGGCAT 9246702 Query 126 GGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTT 185 ||| || | || ||| | |||| || ||||| |||||||||||||||| |||| Sbjct 9246703 TGCTTCGTCGGGCTTTCGCCTATTGTGTAAAATTCCCTACTGCTGCCTCCCGTAAGAGTC 9246762 Query 186 TGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 ||| | |||||||| | ||| ||||| || | |||||||| Sbjct 9246763 TGGGCTGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTCA 9246803 >seq510 Length=5090928 Score = 86.0 bits (94), Expect = 1e-14 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||| ||||| || | || | | ||||| ||| ||| | | | ||| |||| || Sbjct 1534762 AAAATAAGTTCACGACCCATGGG-CCTTCTACCTCCACCCAGCATTGCTTTGTCAGGCTT 1534820 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||||| || ||||||||||| ||||||| ||| |||||||| || Sbjct 1534821 TTGCCCATTGTGGAAAATTCCCCATTGCTGCCTCCCATAGGAGTATGGGCCGTGTCTTAG 1534880 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAG 227 | ||| ||||| || | ||||||||| Sbjct 1534881 TCCCAGTGTGGCTGATCATCCTCTCAG 1534907 >seq1199 Length=7341449 Score = 75.2 bits (82), Expect = 2e-11 Identities = 70/88 (80%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 124 TTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAG 183 || ||||| || | || | | ||||| | ||| |||| |||||||||| ||||| |||| Sbjct 6087532 TTTGCTGGATCGGGCTTTTGATCATTGTCGAAT-TTCCCCACTGCTGCCCCCCGTGGGAG 6087474 Query 184 TTTGGACCGTGTCTCAGTTCCAATGTGG 211 ||||| ||||||||||| ||| ||||| Sbjct 6087473 TTTGGGTCGTGTCTCAGTCCCAGTGTGG 6087446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068738586752