Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2686 98.7 2e-18 seq571 93.3 7e-17 seq4452 84.2 4e-14 >seq2686 Length=2812123 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||| ||| | ||| || ||| || |||| Sbjct 28536 GTACGAGAGGAACCGTTGA-TTCACACAAAT-GGTCATCGCGCTTGGTTGAAAAGCCAGT 28479 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| | ||| |||||||| ||||||||||||||||||||||||| || | Sbjct 28478 GGCACGAAGCTACCGTGTGCCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 28419 Query 121 G 121 | Sbjct 28418 G 28418 Score = 95.1 bits (104), Expect = 2e-17 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||| ||| | ||| || ||| || |||| Sbjct 45637 GTACGAGAGGAACCGTTGA-TTCACACAAAT-GGTCATCGCGCTTGGTTGAAAAGCCAGT 45580 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||| || | ||| |||||||| |||||||||||||||| |||||||| || | Sbjct 45579 GGCGCGAAGCTGCCGTGTGCCGGATTATGACTGAACGCCTCTAAGTTAGAATCCAAGCTA 45520 Query 121 G 121 | Sbjct 45519 G 45519 >seq571 Length=440730 Score = 93.3 bits (102), Expect = 7e-17 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || |||| || || |||| | || || ||| || ||| Sbjct 320367 GTACGAGAGGAACCATTGA-TTCA-AACAAATGGTCATCGCACTTGGTTGAAAAGCTAGT 320424 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||| |||||||| ||||| ||||||||||||||||||| || | Sbjct 320425 GGCGCGAAGCTACCGTGTGCCGGATTATGACTGAAAGCCTCTAAGTCAGAATCCAAGCTA 320484 Query 121 GAACGGGGTG 130 | | | |||| Sbjct 320485 GGAAGCGGTG 320494 >seq4452 Length=3630538 Score = 84.2 bits (92), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || |||| | ||| ||| | | | || ||| || |||| Sbjct 3418027 GTACGAGAGGAACCATTGA-TTCACACAAAT-GGTCATCGTGCTTGGTTGAAAAGCCAGT 3418084 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||| | ||| | |||| | ||||||||||||||||||||||||| || | Sbjct 3418085 GGTGCGAAGCTACCGTGTGCGGAATTAAGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 3418144 Query 121 GAA 123 ||| Sbjct 3418145 GAA 3418147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819154399744