Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq922 131 1e-25 >seq922 Length=8123900 Score = 131 bits (144), Expect = 1e-25 Identities = 379/578 (66%), Gaps = 9/578 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| ||||| | ||| | |||||| ||||| || || || || || || |||| Sbjct 2993466 TGTTTCCCATAAAATATCCCCAAATTTGGGAGATGTATAAGAAAGCAGAGGCCTCTTTCT 2993525 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | || ||||||||| | || ||||| | | ||||||| | | | | Sbjct 2993526 GGACTGCTGAAGAGGTCGATCTCTCTCAAGACCTTCAGCACTGGGATTCTCTCACTTCTG 2993585 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | ||| |||| ||||| | ||||| | || |||||||| ||||| || ||||| ||| Sbjct 2993586 GGGAAAAACACTTCATAACCCATGTCCTTGCTTTCTTTGCAGCTTCTGATGGTATAGTCC 2993645 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||| || | || || ||| | ||||||| ||||| | ||||| | ||||| Sbjct 2993646 TTGAAAACCTTGCGGGTCGATTCATGAAGGAGGTTCAAGTTGCAGAGGCTAGGGCTTTCT 2993705 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 | ||||||||||| ||||| || || ||||||| ||||||||||| | | | || Sbjct 2993706 ATGGCTTCCAGATCGCCATTGAAAACATCCACTCTGAGATGTACAGCCTCTTGCTTGAAT 2993765 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 | ||||||| ||| | | | | | | |||||||||| || | || ||| | || Sbjct 2993766 CTTACATCAAGGATTCCAGTGAGAAGAG-TCGATTGTTCAGGGCTGTTGAAACGGTTCC- 2993823 Query 61423 GCGGTGAAGC--GGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 | ||| || ||||| || ||||| | || ||||| || | | | | | | Sbjct 2993824 -CTGTGTTGCCAAAAAAGCAGACTGGGCGCTAAAATGGAT---CAATTCCTCTGAATCTT 2993879 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 ||| || | ||| | || ||||| || || ||| | || || ||| ||| Sbjct 2993880 TTGCAGAGAGGTTGATTGCTTTTGCCTGTGTTGAAGGTATCTTCTTTTCTGGTAGTTTTT 2993939 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 | || |||||| | || ||| | || | ||||| ||| | |||||| ||||| Sbjct 2993940 GTTCCATATTTTGGCTAAAAAAAAGGGGTTTAATGCCTGGTTTAACCTTCTCTAATGAAC 2993999 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 | || ||| | || || || | || |||||||||||| Sbjct 2994000 TCATTTCAAGAGATGAAGGTTTACACTGTGATTTTGCT 2994037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397540158561440