Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1813 122 1e-25 seq1814 113 6e-23 >seq1813 Length=181482 Score = 122 bits (134), Expect = 1e-25 Identities = 175/248 (71%), Gaps = 18/248 (7%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||| ||||||||||||| || ||||||| || | ||| || Sbjct 32092 CTTAACCTTCCAGCACTGGGCAGGCGTCAGCCCCCTTACATCGTTTTTCAA-CTTGGCGG 32150 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||||| || || ||||| | || ||| | Sbjct 32151 AGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCCCTGCGGCTCCCCCCA----A 32206 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | | ||||| ||||||||||||||||| ||| |||||||||| Sbjct 32207 AGAGG-------------GGAGCACCTCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAG 32253 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | ||| | || | ||| |||||||||||| |||||||||||||| Sbjct 32254 TTCCTTAGAGAGGGTTGCCTCGCGCCCCTAGGTATTCTCTACCCACCCACCTGTGTCGGT 32313 Query 241 TTACGGTA 248 | |||| Sbjct 32314 CTCGGGTA 32321 Score = 122 bits (134), Expect = 1e-25 Identities = 175/248 (71%), Gaps = 18/248 (7%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||| ||||||||||||| || ||||||| || | ||| || Sbjct 147266 CTTAACCTTCCAGCACTGGGCAGGCGTCAGCCCCCTTACATCGTTTTTCAA-CTTGGCGG 147208 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||||| || || ||||| | || ||| | Sbjct 147207 AGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCCCTGCGGCTCCCCCCA----A 147152 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | | ||||| ||||||||||||||||| ||| |||||||||| Sbjct 147151 AGAGG-------------GGAGCACCTCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAG 147105 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | ||| | || | ||| |||||||||||| |||||||||||||| Sbjct 147104 TTCCTTAGAGAGGGTTGCCTCGCGCCCCTAGGTATTCTCTACCCACCCACCTGTGTCGGT 147045 Query 241 TTACGGTA 248 | |||| Sbjct 147044 CTCGGGTA 147037 >seq1814 Length=106468 Score = 113 bits (124), Expect = 6e-23 Identities = 172/244 (70%), Gaps = 26/244 (11%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGT-CTTCGCACGGAC 64 |||| || ||||||||||| ||||| | ||||||| | || || ||| ||| | | Sbjct 52996 CCTTACAGCACCGGGCAGGTGTCAGACTCTATACATGGTATTG--GTACTTTGCAGAGTC 52939 Query 65 CTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACAC 124 ||||||||||| ||||||| ||| ||| ||||||| ||| || ||| Sbjct 52938 CTGTGTTTTTAATAAACAGCCGCCACCCCCTATTCTGTGCCACT--------CTC----- 52892 Query 125 GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCC 184 || || || | ||||||||||||||||||| | |||||||||| |||| Sbjct 52891 -----TCTTGAGA----GCCCTCCTTCTCCCGAAGTTACGGAGTGATTTTGCCGAGTTCC 52841 Query 185 TTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 || | || ||| |||||||||||||||||||| || ||||||||||||||| Sbjct 52840 TTCAAGGTGATTGTCCC-AACGCCTTAGTATTCTCTACTTGTTCACCTGTGTCGGTTTGG 52782 Query 245 GGTA 248 |||| Sbjct 52781 GGTA 52778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694387797222