Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1813 197 3e-48 seq1814 179 9e-43 >seq1813 Length=181482 Score = 197 bits (218), Expect = 3e-48 Identities = 300/429 (70%), Gaps = 40/429 (9%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| | | ||||||||||| |||||| Sbjct 31900 GCATCTTCACAGGCATGTCTATTTCACCGAGCCCCTCTCCGAGACAGCGCCCAAATCGTT 31959 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||| ||||||||| ||||| ||||||||||||||||||| ||||| Sbjct 31960 ACGCCTTTCGTGCGGGTCAGAACTTACCTGACAATGAATTTCGCTACCTTAGGATCGTTA 32019 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC----GTTA--GCTAAC 186 | |||||| |||||||| || ||||||||| | |||||| | | | | Sbjct 32020 TAGTTACGACCGCCGTTGACTGGGGCTTCGGTTGCCAGCTTCCCCCCTCTCAAGGAGGGG 32079 Query 187 CCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTT 241 ||| ||| |||||||||| |||| |||||||||||| ||| ||| || ||| Sbjct 32080 GCCACCAACTTCCTTAACCTTCCAGCACTGGGCAGGCGTCAGCCCCCTTACATCGTTTTT 32139 Query 242 CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG---- 297 | || || ||| |||||||||| ||||||||||| |||||||| || || Sbjct 32140 CAACTTGGCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCCCTGCGGCTC 32199 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 || | ||| |||||| ||| |||||||||||||| Sbjct 32200 CCCCCAAAGAG----GGGAGCA---CCT------------------CTTCTCCCGAAGTT 32234 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 ||| || ||||||| |||||||| | ||| ||| || ||| ||||||||||| Sbjct 32235 ACGAGGCTATTTTGCCGAGTTCCTTAGAGAGGGTTGCCTCGCGCCCCTAGGTATTCTCTA 32294 Query 418 CCCAACCAC 426 |||| |||| Sbjct 32295 CCCACCCAC 32303 Score = 197 bits (218), Expect = 3e-48 Identities = 300/429 (70%), Gaps = 40/429 (9%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| | | ||||||||||| |||||| Sbjct 147458 GCATCTTCACAGGCATGTCTATTTCACCGAGCCCCTCTCCGAGACAGCGCCCAAATCGTT 147399 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||| ||||||||| ||||| ||||||||||||||||||| ||||| Sbjct 147398 ACGCCTTTCGTGCGGGTCAGAACTTACCTGACAATGAATTTCGCTACCTTAGGATCGTTA 147339 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC----GTTA--GCTAAC 186 | |||||| |||||||| || ||||||||| | |||||| | | | | Sbjct 147338 TAGTTACGACCGCCGTTGACTGGGGCTTCGGTTGCCAGCTTCCCCCCTCTCAAGGAGGGG 147279 Query 187 CCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTT 241 ||| ||| |||||||||| |||| |||||||||||| ||| ||| || ||| Sbjct 147278 GCCACCAACTTCCTTAACCTTCCAGCACTGGGCAGGCGTCAGCCCCCTTACATCGTTTTT 147219 Query 242 CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCG---- 297 | || || ||| |||||||||| ||||||||||| |||||||| || || Sbjct 147218 CAACTTGGCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCCCTGCGGCTC 147159 Query 298 ACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTT 357 || | ||| |||||| ||| |||||||||||||| Sbjct 147158 CCCCCAAAGAG----GGGAGCA---CCT------------------CTTCTCCCGAAGTT 147124 Query 358 ACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTA 417 ||| || ||||||| |||||||| | ||| ||| || ||| ||||||||||| Sbjct 147123 ACGAGGCTATTTTGCCGAGTTCCTTAGAGAGGGTTGCCTCGCGCCCCTAGGTATTCTCTA 147064 Query 418 CCCAACCAC 426 |||| |||| Sbjct 147063 CCCACCCAC 147055 >seq1814 Length=106468 Score = 179 bits (198), Expect = 9e-43 Identities = 209/280 (75%), Gaps = 9/280 (3%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGT-GGAGACAG 59 ||| | ||| | |||||||||| | || ||||| ||||||| | ||| | |||||||| Sbjct 53187 CGCTGGTACTCCGCATCTTCACGGAGAATTCAAATTCACTGGG-CTCACCTTGGAGACAG 53129 Query 60 CGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC 119 || || |||| || |||||| |||||| || | ||| || |||||||||||||||| Sbjct 53128 CGGGGCAGTCGTGACACCATTCATGCAGGACGTTAATTATACGTCAAGGAATTTCGCTAC 53069 Query 120 CTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT 179 |||||||| |||| ||||| |||||||||||| ||||||| || ||| | Sbjct 53068 CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTTCATTCGAAGCAT------ 53015 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 || ||| | | ||| ||||| | |||||||||||| |||| || |||||| | | Sbjct 53014 -ACTTACCTCTCCTATTCACCTTACAGCACCGGGCAGGTGTCAGACTCTATACATGGTAT 52956 Query 240 TTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | |||||||||| ||||||||||||||||||| ||| Sbjct 52955 TGGTACTTTGCAGAGTCCTGTGTTTTTAATAAACAGCCGC 52916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260777129088