Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1813 399 7e-109 seq1814 188 2e-45 seq1376 91.5 4e-16 >seq1813 Length=181482 Score = 399 bits (442), Expect = 7e-109 Identities = 394/499 (79%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 37674 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGAGCCCGCACAAGCGGTGGAGCAT 37615 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCT 119 |||||||||||||| ||||||||||||||||||||| |||||||| || | ||||| Sbjct 37614 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAACCCCC 37555 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 || |||| | || | |||||||| | | | ||||||| ||||||| |||||||| Sbjct 37554 CT-GAGAGGGGGGGGT-GCCTTCGGGAG-CGCGGACACAGGTGGTGCATGGCTGTCGTCA 37498 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||||||| |||||||||||| |||||||||||||||||||||| |||||| Sbjct 37497 GCTCGTGTCGTAAGATGTTGGGTTCAGTCCCGCAACGAGCGCAACCCCCGTCTCTAGTTG 37438 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || || | || ||||| ||| ||| ||||||| || ||||||||||||||||| Sbjct 37437 CC--CA--CAATTCGGCACCCTAGAGAGACCGCCGGTGTTAAGCCGGAGGAAGGTGGGGA 37382 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 || ||||| ||| |||||||||| || ||||| |||||||||||||||||| | | Sbjct 37381 TGAGGTCAAGTCAACATGCCCCTTTTGCCCTGGGCGACACACGTGCTACAATGGCCGGGA 37322 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAG-CAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 ||||| | |||| |||| ||| | || | | | | |||| | |||||||||||| Sbjct 37321 CAAAGAGATGCGACCCCGCAAGGGCCAGCCTGACCTCGTAAACCCGGCCTCAGTTCGGAT 37262 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGC 477 ||||| ||||||| || ||| |||||| |||||||||||||||| | |||| ||| | Sbjct 37261 TGTAGGCTGCAACCCGCCTACATGAAGGAGGAATCGCTAGTAATCACCGGTCAGCCATAC 37202 Query 478 TACGGTGAATACGTTCCCG 496 ||||||| |||||||| Sbjct 37201 GGTGGTGAATCCGTTCCCG 37183 Score = 399 bits (442), Expect = 7e-109 Identities = 394/499 (79%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 141684 TACGCTCGCAAGAGTGAAACTCAAAGGAATTGACGGGAGCCCGCACAAGCGGTGGAGCAT 141743 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCT 119 |||||||||||||| ||||||||||||||||||||| |||||||| || | ||||| Sbjct 141744 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAACCCCC 141803 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 || |||| | || | |||||||| | | | ||||||| ||||||| |||||||| Sbjct 141804 CT-GAGAGGGGGGGGT-GCCTTCGGGAG-CGCGGACACAGGTGGTGCATGGCTGTCGTCA 141860 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||||||| |||||||||||| |||||||||||||||||||||| |||||| Sbjct 141861 GCTCGTGTCGTAAGATGTTGGGTTCAGTCCCGCAACGAGCGCAACCCCCGTCTCTAGTTG 141920 Query 240 CCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 || || | || ||||| ||| ||| ||||||| || ||||||||||||||||| Sbjct 141921 CC--CA--CAATTCGGCACCCTAGAGAGACCGCCGGTGTTAAGCCGGAGGAAGGTGGGGA 141976 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 || ||||| ||| |||||||||| || ||||| |||||||||||||||||| | | Sbjct 141977 TGAGGTCAAGTCAACATGCCCCTTTTGCCCTGGGCGACACACGTGCTACAATGGCCGGGA 142036 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAG-CAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 ||||| | |||| |||| ||| | || | | | | |||| | |||||||||||| Sbjct 142037 CAAAGAGATGCGACCCCGCAAGGGCCAGCCTGACCTCGTAAACCCGGCCTCAGTTCGGAT 142096 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGC 477 ||||| ||||||| || ||| |||||| |||||||||||||||| | |||| ||| | Sbjct 142097 TGTAGGCTGCAACCCGCCTACATGAAGGAGGAATCGCTAGTAATCACCGGTCAGCCATAC 142156 Query 478 TACGGTGAATACGTTCCCG 496 ||||||| |||||||| Sbjct 142157 GGTGGTGAATCCGTTCCCG 142175 >seq1814 Length=106468 Score = 188 bits (208), Expect = 2e-45 Identities = 234/321 (73%), Gaps = 31/321 (10%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||| ||||||||||||||||||| ||||| || |||||||||||||| ||| Sbjct 48627 TACGATGGCAACATTGAAACTCAAAGGAATTGGCGGGGGCCTGCACAAGCGGTGGAACAT 48686 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT---CCTCTGACCC 117 ||||||||||||||| ||||||| | |||||||||| |||||||| | | | || Sbjct 48687 GTGGTTTAATTCGAAACAACGCGCAAAACCTTACCAGCCCTTGACATAGAGCACAGCGCC 48746 Query 118 CTCTAGAGATAGAGGTTTCCCCTTCGGGGGACA--GAGTGACAGGTGATGCATGGTTGTC 175 |||| || || || | | | ||| | | ||||||| ||||||| |||| Sbjct 48747 CTCT---GAGAGGGGAGGCACTAT------ACAATGCTTTACAGGTGCTGCATGGCTGTC 48797 Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTA 235 |||||||||||||||||||||| ||||||||||| |||||||| |||||| | || Sbjct 48798 GTCAGCTCGTGTCGTGAGATGTCGGGTTAAGTCCTATAACGAGCGAAACCCTCGTCCCTA 48857 Query 236 GTTGCCA------------TCATTAAGTTG-----GGCACTCTAAGTTGACTGCCGGTGA 278 ||||| | |||| ||| || | |||||| | ||||||||| || Sbjct 48858 GTTGCAAAGTGCGGCTTGTTCATCAAGCTGTTCACAGAACTCTAGGGAGACTGCCGGCGA 48917 Query 279 CAAACCGGAGGAAGGTGGGGA 299 | ||||| ||| ||||||| Sbjct 48918 TATGCCGGATGAAAGTGGGGA 48938 Score = 134 bits (148), Expect = 4e-29 Identities = 145/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || ||||| || ||||| ||||||||||||||| |||||||| | || Sbjct 50178 GACGTCAAGTCCTCATGGCCTTTATGGGCTGGGCTACACACGTGTTACAATGGCAAGCAC 50237 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 | |||| ||| | |||| ||| ||| ||||| || |||| | |||| ||||||| Sbjct 50238 AGAGGGAAGCAATGCCGCAAGGCGGAGCGAATCCTTAAATCTTGTCC-CAGTCCGGATTG 50296 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 |||||||||| |||||| |||||||||||||||||| |||||||| || | Sbjct 50297 CTCGCTGCAACTCGCGAGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCACGCCGC 50356 Query 481 GGTGAATACGT 491 |||||||| || Sbjct 50357 GGTGAATATGT 50367 >seq1376 Length=77613 Score = 91.5 bits (100), Expect = 4e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAG 76 |||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||| | Sbjct 50527 AAACTCAAAGGAATTGGCGGGAGCCCGCACAAGCGGTGGAGCATGTGGTTCAATTCGATG 50586 Query 77 CAA 79 ||| Sbjct 50587 CAA 50589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503972717440