Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1813 228 2e-57 seq1814 199 8e-49 >seq1813 Length=181482 Score = 228 bits (252), Expect = 2e-57 Identities = 240/311 (77%), Gaps = 20/311 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| | | |||||||||||||||||| || ||||| |||||||||||| Sbjct 38148 CACGCGGCATTGCCCCG-TCAGGCTTTCGCCCATTGCGGAAGATTCCTCACTGCTGCCTC 38206 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| Sbjct 38207 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCA 38266 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||||| ||||||| ||||||||| | |||||||||||||| ||| | || | | Sbjct 38267 ACTGATCGTTGCCTTGGGAGGCCATTACCCCCCCAACTAGCTAATCAGACGCAAGCCCCT 38326 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC-CCGTAGGACGTATGCGGTATTAG 267 | | ||| || | || ||||| | || |||| |||| |||||||| Sbjct 38327 -------CCCTGGGC-----GGATCTCTCCTTTCCCTCCTCAGGA--TATGGGGTATTAG 38372 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||||||||| || ||| ||||| | | || || || ||||||| Sbjct 38373 CAGCCGTTTCCAGCTGTTATCCCC--CTCCCAGGGGCAGGTCCTTACGCGTTCCTCACCC 38430 Query 326 GTCCGCCGCTC 336 ||||||| ||| Sbjct 38431 GTCCGCCACTC 38441 Score = 228 bits (252), Expect = 2e-57 Identities = 240/311 (77%), Gaps = 20/311 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| | | |||||||||||||||||| || ||||| |||||||||||| Sbjct 141210 CACGCGGCATTGCCCCG-TCAGGCTTTCGCCCATTGCGGAAGATTCCTCACTGCTGCCTC 141152 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| Sbjct 141151 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCA 141092 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||||| ||||||| ||||||||| | |||||||||||||| ||| | || | | Sbjct 141091 ACTGATCGTTGCCTTGGGAGGCCATTACCCCCCCAACTAGCTAATCAGACGCAAGCCCCT 141032 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC-CCGTAGGACGTATGCGGTATTAG 267 | | ||| || | || ||||| | || |||| |||| |||||||| Sbjct 141031 -------CCCTGGGC-----GGATCTCTCCTTTCCCTCCTCAGGA--TATGGGGTATTAG 140986 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||||||||| || ||| ||||| | | || || || ||||||| Sbjct 140985 CAGCCGTTTCCAGCTGTTATCCCC--CTCCCAGGGGCAGGTCCTTACGCGTTCCTCACCC 140928 Query 326 GTCCGCCGCTC 336 ||||||| ||| Sbjct 140927 GTCCGCCACTC 140917 >seq1814 Length=106468 Score = 199 bits (220), Expect = 8e-49 Identities = 162/194 (84%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 17 CCTTCTT-TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCC 75 ||||| | |||| ||| ||| |||| |||||||||||||||||||||||||||| ||||| Sbjct 48180 CCTTCGTCTCACCCACTCGGTATTG-CTGGATCAGGCTTTCGCCCATTGTCCAAGATTCC 48122 Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 |||||||||||||||| ||||||| | |||| ||||||| |||||||| | ||||| || Sbjct 48121 TCACTGCTGCCTCCCGTGGGAGTCTAGGCCGTATCTCAGTCCCAGTGTGGCCGATCACCC 48062 Query 136 TCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCC 195 || || | |||||||||| | |||||| ||||||| ||| |||||||| ||||||| Sbjct 48061 GAAAAGGCCGGCTACGGATCGTTGGCTTGGTAAGCCATTTCCTTACCAACTACCTAATCC 48002 Query 196 GACCTAGGCTCATC 209 ||| | ||||||| Sbjct 48001 GACGCAAGCTCATC 47988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071980553920