Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1813 282 2e-73 seq1814 132 2e-28 >seq1813 Length=181482 Score = 282 bits (312), Expect = 2e-73 Identities = 351/470 (75%), Gaps = 22/470 (5%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | |||| ||||||| ||||| Sbjct 33080 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGAGTTCGATTGGCATTTCA 33139 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| |||||| |||||| | | ||||||| | || ||| ||| ||||||| | | Sbjct 33140 CCCCTAACCACAGCTCATCCGCCGATCTTTCAACATCGGTCGGTACGGGCCTCCACTCAG 33199 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATCG-T 313 ||| ||| |||||| |||| |||||| ||||||||| | ||||||| | | | || | Sbjct 33200 TCTCACCAAAGCTTCACCCTGGCCATGGTTAGATCACTCGGGTTCGGGTCCATAAACGAT 33259 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--CCCACA-CGGGTTAA 370 | ||| ||||| || |||| ||||||||||||| | | | || || ||| Sbjct 33260 G----ACATGGGCCCTTGTCAGACTTGCTTTCGCTACGGTTTCGGCGTGCATCGCCTTAG 33315 Query 371 CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 || || || | | | |||| |||||||||||||| |||||||| |||| ||| Sbjct 33316 CCGTGCCAC-CGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GGGGTT 33373 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 | ||| | | |||| || | ||||| || | ||||||| | || ||||||| Sbjct 33374 C----AAGCCCC-----CTCCCACCGCTTGTAAGCTTACGGTTTCATGGTCTTTTTCACT 33424 Query 491 CCC-CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||| | ||| |||| ||||||||| ||||||||||||||| || |||||||||||| | | Sbjct 33425 CCCTCTCCA-GGGTTCTTTTCACCCTTCCCTCACGGTACTAGTTCGCTATCGGTCATCCA 33483 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| |||||||||||| |||||| Sbjct 33484 GGAGTATTTAGCCTTACGAGGTGGTCCTCGCAGATTCACACGGGATTTCA 33533 Score = 282 bits (312), Expect = 2e-73 Identities = 351/470 (75%), Gaps = 22/470 (5%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | |||| ||||||| ||||| Sbjct 146278 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGAGTTCGATTGGCATTTCA 146219 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| |||||| |||||| | | ||||||| | || ||| ||| ||||||| | | Sbjct 146218 CCCCTAACCACAGCTCATCCGCCGATCTTTCAACATCGGTCGGTACGGGCCTCCACTCAG 146159 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATCG-T 313 ||| ||| |||||| |||| |||||| ||||||||| | ||||||| | | | || | Sbjct 146158 TCTCACCAAAGCTTCACCCTGGCCATGGTTAGATCACTCGGGTTCGGGTCCATAAACGAT 146099 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--CCCACA-CGGGTTAA 370 | ||| ||||| || |||| ||||||||||||| | | | || || ||| Sbjct 146098 G----ACATGGGCCCTTGTCAGACTTGCTTTCGCTACGGTTTCGGCGTGCATCGCCTTAG 146043 Query 371 CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 || || || | | | |||| |||||||||||||| |||||||| |||| ||| Sbjct 146042 CCGTGCCAC-CGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA-GGGGTT 145985 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 | ||| | | |||| || | ||||| || | ||||||| | || ||||||| Sbjct 145984 C----AAGCCCC-----CTCCCACCGCTTGTAAGCTTACGGTTTCATGGTCTTTTTCACT 145934 Query 491 CCC-CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||| | ||| |||| ||||||||| ||||||||||||||| || |||||||||||| | | Sbjct 145933 CCCTCTCCA-GGGTTCTTTTCACCCTTCCCTCACGGTACTAGTTCGCTATCGGTCATCCA 145875 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| |||||||||||| |||||| Sbjct 145874 GGAGTATTTAGCCTTACGAGGTGGTCCTCGCAGATTCACACGGGATTTCA 145825 >seq1814 Length=106468 Score = 132 bits (146), Expect = 2e-28 Identities = 191/265 (72%), Gaps = 16/265 (6%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGT-AAGCTTGTGGGCC-CCCTAGACCATCCAGTGC 110 || ||||||||||| ||| ||||| |||||| |||||| |||||| ||||| ||||| Sbjct 51974 GGTATTCGGAGTTTCCTTGGGATCGGTCAAGCTT-TGGGCCACCCTAGCCCATCGAGTGC 51916 Query 111 TCTACCTCCGGGAAGAAACACGCG---------ACGCTGCACCTAAATGCATTTCGGGGA 161 |||||| || | ||||||| ||||| |||||||| |||||| | Sbjct 51915 TCTACCCCCT---ACAAACACGATTGCTGAAGAACGCTCTACCTAAATAGATTTCGCAAA 51859 Query 162 GAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAG 221 ||||||||||| | |||||| ||||||||||||||| ||||||||||| | | Sbjct 51858 AAACCAGCTATCTTCGATTTTGATAGGCCTTTCACCCCTAGCCACAGGTCATTTCATACT 51799 Query 222 TTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCG-CGCTTCAACCTGCCCA 280 ||| | || | | ||||||| |||||| | | | || |||||||||||||||| Sbjct 51798 TTTGCCACAGTAACGAATTCGGTCTTCCACGTGCTGTCGGGCGCCGCTTCAACCTGCCCA 51739 Query 281 TGGATAGATCACTTCGCTTCGGGTC 305 ||| ||| ||| | |||||||| Sbjct 51738 TGGCTAGCTCAATCGATTTCGGGTC 51714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817567028736