Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1813 190 4e-46 seq1814 170 4e-40 >seq1813 Length=181482 Score = 190 bits (210), Expect = 4e-46 Identities = 218/292 (75%), Gaps = 16/292 (5%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || || |||||||||||||||||||||||||||||| Sbjct 38165 TCAGGCTTTCGCCCATTGCGGAAGATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 38224 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| |||||| | ||| |||||||| || || || |||||| | ||||| Sbjct 38225 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCAACTGATCGTTGCCTTGGG 38284 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192 ||| |||| | | ||||||| |||||| | ||| ||||| || | ||| |||| Sbjct 38285 AGGCCATTACCCCCCCAACTAGCTAATCAGACGCAAGCCCCTCCCTGGGCG---GATCTC 38341 Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252 | | | || ||||| | |||| ||||||||| |||||||| || Sbjct 38342 TCCT----------TTCCCTCCTC--AGGATATGGGGTATTAGCAGCCGTTTCCAGCTGT 38389 Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 ||| || ||| | |||||| | || ||| ||| ||||||||||||||||| Sbjct 38390 TATCCCCCTCCCAGGGGCAGG-TCCTTACGCGTTCCTCACCCGTCCGCCACT 38440 Score = 190 bits (210), Expect = 4e-46 Identities = 218/292 (75%), Gaps = 16/292 (5%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || || |||||||||||||||||||||||||||||| Sbjct 141193 TCAGGCTTTCGCCCATTGCGGAAGATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 141134 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| |||||| | ||| |||||||| || || || |||||| | ||||| Sbjct 141133 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCAACTGATCGTTGCCTTGGG 141074 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192 ||| |||| | | ||||||| |||||| | ||| ||||| || | ||| |||| Sbjct 141073 AGGCCATTACCCCCCCAACTAGCTAATCAGACGCAAGCCCCTCCCTGGGCG---GATCTC 141017 Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252 | | | || ||||| | |||| ||||||||| |||||||| || Sbjct 141016 TCCT----------TTCCCTCCTC--AGGATATGGGGTATTAGCAGCCGTTTCCAGCTGT 140969 Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 ||| || ||| | |||||| | || ||| ||| ||||||||||||||||| Sbjct 140968 TATCCCCCTCCCAGGGGCAGG-TCCTTACGCGTTCCTCACCCGTCCGCCACT 140918 >seq1814 Length=106468 Score = 170 bits (188), Expect = 4e-40 Identities = 144/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| |||| |||||||| ||| || || |||||||||||||||| ||||||| Sbjct 48156 GCTGGATCAGGCTTTCGCCCATTGTCCAAGATTCCTCACTGCTGCCTCCCGTGGGAGTCT 48097 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||| ||||||||||| |||||||| ||| || || |||||||| |||||| || Sbjct 48096 AGGCCGTATCTCAGTCCCAGTGTGGCCGATCACCCGAAAAGGCCGGCTACGGATCGTTGG 48037 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG 183 |||||| || ||| || ||||||||||||||| | ||| ||| |||| ||||| Sbjct 48036 CTTGGTAAGCCATTTCCTTACCAACTACCTAATCCGACGCAAGCTCATCAAGCAGCG 47980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998381889024