Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1813 201 3e-49 seq1814 131 4e-28 >seq1813 Length=181482 Score = 201 bits (222), Expect = 3e-49 Identities = 295/408 (72%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || || |||| |||||||| ||||||| || ||||||||| | ||| | | | | Sbjct 32546 CGGCTGCGCCCTTCGGCCTCACCTTAGGCCCTGACTCACCCCCCGTGGACGAGCCTTCCA 32605 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | || |||||| |||| || || |||||| ||| Sbjct 32606 GGGGAACCCTTGGGTTTTCGGGGCACTGGATTCTCACCAGTGTTTGCGTTACTCAAGCCG 32665 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| ||| || ||||| | || | | |||||| | ||| | | Sbjct 32666 ACATTCTCACTTCCGCCTCG--TCCACGCCTGC-TCTCGCTTACGCTTCAAC-CTGCCGC 32721 Query 178 G--ACGCTCCCCTACCCAACCAC---ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 | ||||||||||||| | | ||| | ||| || ||||| | ||| || Sbjct 32722 GGAACGCTCCCCTACCGATGCTTTTTACA---TCCCATGGCCTCGGCAGGCCGCTTGAGT 32778 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| | ||| | ||||||| | | ||||| ||||||||||||||||||||||| |||| Sbjct 32779 CCCGTT-CATCTTTGGCGCGGGAGCGCTTGATCAGTGAGCTATTACGCACTCTTTAAAGG 32837 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| ||| ||||||||||| ||||| | Sbjct 32838 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTGAGCACTCCCACATCCTTTGCCACTTA 32897 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | ||| || ||||||||||| |||| ||||||||||| |||||||| Sbjct 32898 GCGGCCATTTGGGGGCCTTAGCCGATGGTCTGGGCTGTTCCCCTCTCG 32945 Score = 201 bits (222), Expect = 3e-49 Identities = 295/408 (72%), Gaps = 16/408 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || || |||| |||||||| ||||||| || ||||||||| | ||| | | | | Sbjct 146812 CGGCTGCGCCCTTCGGCCTCACCTTAGGCCCTGACTCACCCCCCGTGGACGAGCCTTCCA 146753 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | || |||||| |||| || || |||||| ||| Sbjct 146752 GGGGAACCCTTGGGTTTTCGGGGCACTGGATTCTCACCAGTGTTTGCGTTACTCAAGCCG 146693 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| ||| || ||||| | || | | |||||| | ||| | | Sbjct 146692 ACATTCTCACTTCCGCCTCG--TCCACGCCTGC-TCTCGCTTACGCTTCAAC-CTGCCGC 146637 Query 178 G--ACGCTCCCCTACCCAACCAC---ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 | ||||||||||||| | | ||| | ||| || ||||| | ||| || Sbjct 146636 GGAACGCTCCCCTACCGATGCTTTTTACA---TCCCATGGCCTCGGCAGGCCGCTTGAGT 146580 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| | ||| | ||||||| | | ||||| ||||||||||||||||||||||| |||| Sbjct 146579 CCCGTT-CATCTTTGGCGCGGGAGCGCTTGATCAGTGAGCTATTACGCACTCTTTAAAGG 146521 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| | || |||||||||| ||||| ||| ||||||||||| ||||| | Sbjct 146520 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTGAGCACTCCCACATCCTTTGCCACTTA 146461 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | ||| || ||||||||||| |||| ||||||||||| |||||||| Sbjct 146460 GCGGCCATTTGGGGGCCTTAGCCGATGGTCTGGGCTGTTCCCCTCTCG 146413 >seq1814 Length=106468 Score = 131 bits (144), Expect = 4e-28 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| | || |||| ||||||| | |||| | ||||| | || |||||||||| Sbjct 52318 GCTTCGGTGAATCACTTGAGCCCCGGTTCATTTTAGGCGCCGCTAAGCTAGACCAGTGAG 52259 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 || |||||| || | |||||||||||||||||||| |||||| |||||| ||| Sbjct 52258 CTGTTACGCTGTCATAATAGGATGGCTGCTTCCAAGCCCACCTCCCGGTTGTAATCGCCT 52199 Query 332 CTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391 | || ||||| ||||| ||| | ||| ||| ||||||| | ||||||||||||| Sbjct 52198 AGCGACCACCTTTTCCACTAAGTGATTGCTTTGGGACCTTAGCATACGATCTGGGCTGTT 52139 Query 392 TCCCT 396 ||||| Sbjct 52138 TCCCT 52134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177578638336