Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1813 141 2e-31 seq1814 116 6e-24 >seq1813 Length=181482 Score = 141 bits (156), Expect = 2e-31 Identities = 185/252 (73%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 ||||||||| ||| |||| ||| || |||||||||||||||||| ||| |||||||| Sbjct 37841 GCCTTCGCCCTTGGCGTTCTTCCCGATCTCTACGCATTTCACCGCTCCACCGGGAATTCC 37900 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTAT---GGGTTGAGCC 160 |||| || | | ||||||| || || || | || | |||||||||| Sbjct 37901 CTCTGCCCCTACCGGACTCAAGCCCGGTGGTCTCC---GCCGCCTCTCCAGGGTTGAGCC 37957 Query 161 CATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCG 220 | ||||| ||| | |||| || || ||| | |||||||| |||||| | |||| Sbjct 37958 CCAGGTTTTGACAGCGGACTGACCGGGCCACCTGCGGACCCTTTACGCCCAATCATTCCG 38017 Query 221 GATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAG-TTAGCCGTGGCTTA 279 ||||||||| || || ||| |||||||||||||||||||| | ||||||| ||||| Sbjct 38018 GATAACGCTCGCATCCCCCGTCTTACCGCGGCTGCTGGCACGGGGTTTAGCCGATGCTTA 38077 Query 280 -TTCCTCAGGTA 290 ||| ||||||| Sbjct 38078 GTTCTTCAGGTA 38089 Score = 141 bits (156), Expect = 2e-31 Identities = 185/252 (73%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 ||||||||| ||| |||| ||| || |||||||||||||||||| ||| |||||||| Sbjct 141517 GCCTTCGCCCTTGGCGTTCTTCCCGATCTCTACGCATTTCACCGCTCCACCGGGAATTCC 141458 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTAT---GGGTTGAGCC 160 |||| || | | ||||||| || || || | || | |||||||||| Sbjct 141457 CTCTGCCCCTACCGGACTCAAGCCCGGTGGTCTCC---GCCGCCTCTCCAGGGTTGAGCC 141401 Query 161 CATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCG 220 | ||||| ||| | |||| || || ||| | |||||||| |||||| | |||| Sbjct 141400 CCAGGTTTTGACAGCGGACTGACCGGGCCACCTGCGGACCCTTTACGCCCAATCATTCCG 141341 Query 221 GATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAG-TTAGCCGTGGCTTA 279 ||||||||| || || ||| |||||||||||||||||||| | ||||||| ||||| Sbjct 141340 GATAACGCTCGCATCCCCCGTCTTACCGCGGCTGCTGGCACGGGGTTTAGCCGATGCTTA 141281 Query 280 -TTCCTCAGGTA 290 ||| ||||||| Sbjct 141280 GTTCTTCAGGTA 141269 >seq1814 Length=106468 Score = 116 bits (128), Expect = 6e-24 Identities = 205/289 (71%), Gaps = 15/289 (5%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTG--TCCAGCAATCCGCCTTCGCCACTGGT 58 |||||||||||| ||| ||||||||| ||| || | | ||||||||| | || Sbjct 48516 CCCACGCTTTCGTACCTTAGCGTCAGT--CTGGATCTAAAGAGTTGCCTTCGCCGCCGGC 48459 Query 59 GTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGAT--TGCCTCTCCA 116 ||||| | ||||||| | |||| | | || ||| | |||||| | | ||| |||| Sbjct 48458 CTTCCTTCTAATATCTATGAATTTAATCTCTCCACTAGAAATTCCACTCTTCCCTATCCA 48399 Query 117 GCACTCAA-GAAA-AACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACAT 174 |||||| || | ||||| | ||| | | | || |||| |||| || | || | | Sbjct 48398 --ACTCAAAGACAGAACAGCTGCAAGACC-GTCCATAGGTTAAGCCTATGGCTT--AGGT 48344 Query 175 CTGACTTGC--CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC 232 |||| | || |||||||| |||||||| |||||| | || | ||||| || || Sbjct 48343 CTGAGCTCAATCTGACCGCCTACGTACCCTTTACGCCCAATTATTCTGAATAACACTAGC 48284 Query 233 CACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATT 281 | || |||||||||||| ||||||||||| |||||| || ||||| || Sbjct 48283 CCCCCCCGTATTACCGCGTCTGCTGGCACGGAGTTAGACGGGGCTTCTT 48235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828785435394