Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1813 205 1e-50 seq1814 129 9e-28 >seq1813 Length=181482 Score = 205 bits (226), Expect = 1e-50 Identities = 210/271 (77%), Gaps = 5/271 (2%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATG 66 |||||| ||||||||| |||||| | |||| |||| || | ||| |||||| | | Sbjct 31166 GGCTTCCTACTTAGATGCTTTCAGCAGTGATCCGTTCCGCACATGGCTACCCAGCGTGTC 31225 Query 67 CACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGG 126 | |||||| | |||||| |||||| ||| || | ||||||||||||||||||| || Sbjct 31226 CCGTTGGCACGAGAACTGGCACACCAGCGGTGCGTGCCTCCCGGTCCTCTCGTACTAGGG 31285 Query 127 ACAGCTCCTCTCAAATTTCCTACGC--CCACGACGGATAGGGACCGAACTGTCTCGCGAC 184 | | || ||||| || |||| |||| | |||| ||||| ||||||||| |||| Sbjct 31286 AGATGGCCCCTCAATGCTCTCACGCCTCCACTA--GATATGGACCAAACTGTCTCACGAC 31343 Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 |||||||||||||||| || | |||| ||||||||||||||||||||||||||| | | Sbjct 31344 GTTCTGAACCCAGCTCATGTAACACTTTGATGGGCGAACAGCCCAACCCTTGGGACGTGC 31403 Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | | ||||||||||| | ||||||||||| Sbjct 31404 TACCGCCCCAGGATGTGTTAAGCCGACATCG 31434 Score = 205 bits (226), Expect = 1e-50 Identities = 210/271 (77%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATG 66 |||||| ||||||||| |||||| | |||| |||| || | ||| |||||| | | Sbjct 148192 GGCTTCCTACTTAGATGCTTTCAGCAGTGATCCGTTCCGCACATGGCTACCCAGCGTGTC 148133 Query 67 CACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGG 126 | |||||| | |||||| |||||| ||| || | ||||||||||||||||||| || Sbjct 148132 CCGTTGGCACGAGAACTGGCACACCAGCGGTGCGTGCCTCCCGGTCCTCTCGTACTAGGG 148073 Query 127 ACAGCTCCTCTCAAATTTCCTACGCC--CACGACGGATAGGGACCGAACTGTCTCGCGAC 184 | | || ||||| || ||||| ||| | |||| ||||| ||||||||| |||| Sbjct 148072 AGATGGCCCCTCAATGCTCTCACGCCTCCACTA--GATATGGACCAAACTGTCTCACGAC 148015 Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 |||||||||||||||| || | |||| ||||||||||||||||||||||||||| | | Sbjct 148014 GTTCTGAACCCAGCTCATGTAACACTTTGATGGGCGAACAGCCCAACCCTTGGGACGTGC 147955 Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | | ||||||||||| | ||||||||||| Sbjct 147954 TACCGCCCCAGGATGTGTTAAGCCGACATCG 147924 >seq1814 Length=106468 Score = 129 bits (142), Expect = 9e-28 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||| ||||||||| ||||||||| |||||| ||| ||| || |||| || ||| Sbjct 53723 GATAGGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGC 53664 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || ||||||||||| || ||||| |||||||||| || ||| |||||||| Sbjct 53663 GAACAACCGAACCCTTGGGAGCTTCTTCACCCCCAGGATGTGATGAGTCGACATCG 53608 Score = 84.2 bits (92), Expect = 3e-14 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 ||| | || ||| ||||| |||| |||||| || |||| | ||||| | |||||| | Sbjct 53940 GAGAAAGGTTTCCCGCTTATATGCTTTCAGCAGTTCTCCCGTGCAAACGTGGCTTCCTGG 53881 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| ||| ||| || ||| |||||||| | |||||||||||||||| Sbjct 53880 CGATGCCGCTGGTGCGACAGTCAGTACACTAGAGGTTTACCTGCCCCGGTCCTCTCGTAC 53821 Query 122 TAAGGACAGCTCCTCTCAA 140 ||||| |||| |||||||| Sbjct 53820 TAAGGGCAGCGCCTCTCAA 53802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780786278904