Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1814 300 5e-79 seq1813 286 1e-74 seq1783 89.7 2e-15 >seq1814 Length=106468 Score = 300 bits (332), Expect = 5e-79 Identities = 270/334 (81%), Gaps = 5/334 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||| |||||| |||||||||||| || ||||||||||| | |||||| ||||||| || Sbjct 47997 GCGTCGGATTAGGTAGTTGGTAAGGAAATGGCTTACCAAGCCAACGATCCGTAGCCGGCC 48056 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 | ||||||||||||||| ||| ||||||| |||| | | ||||| |||||||||||| Sbjct 48057 TTTTCGGGTGATCGGCCACACTGGGACTGAGATACGGCCTAGACTCCCACGGGAGGCAGC 48116 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT--GAGCGATG 338 |||| ||||| ||| ||||||||| |||||||||| |||||| ||| || | | || | Sbjct 48117 AGTGAGGAATCTTGGACAATGGGCGAAAGCCTGATCCAGCAATACCGAGTGGGTGAGACG 48176 Query 339 AAGGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGA-AGATAATGACGGTACTTGAGGAG 396 ||||| | ||||||||||| || || || || | ||| |||||| ||| || | Sbjct 48177 AAGGCTAATTAGGTCGTAAAGCCCTTTCGTCGAGAAGAGACAATGACAAGACTCGAAAAA 48236 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 ||||||||| |||||| ||||||||||| |||||||||||| ||||||||| ||||| | Sbjct 48237 GAAGCCCCGTCTAACTCCGTGCCAGCAGACGCGGTAATACGGGGGGGGCTAGTGTTATTC 48296 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||| || | ||||||||||||| |||||| ||| Sbjct 48297 AGAA-TAATTGGGCGTAAAGGGTACGTAGGCGGT 48329 >seq1813 Length=181482 Score = 286 bits (316), Expect = 1e-74 Identities = 270/336 (80%), Gaps = 9/336 (3%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||||||||||||||||||| ||||| ||| | ||||||| ||||||||| || | | Sbjct 38318 GCGTCTGATTAGCTAGTTGGGGGGGTAATGGCCTCCCAAGGCAACGATCAGTTGCTGGTC 38259 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 38258 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 38199 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | |||| |||||||| |||||| Sbjct 38198 AGTGAGGAATCTTCCGCAATGGGCGAAAGCCTGACGGGGCAATGCCGCGTGGAGGATGAA 38139 Query 341 GG-CCTTCGGGTCGTAAAGCTCTGT-CCTCA---AGGAAGATAATGACGGTACTTG-AGG 394 || || |||||||||| ||| | ||| | ||||| |||||||||| || || Sbjct 38138 GGCCCAATGGGTCGTAAACTTCTTTAGATCAGAGACGAAGA-GATGACGGTACCTGAAGA 38080 Query 395 AGGAAGCCCCGGCT-AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 | |||| ||||| ||| |||||||||||||||||||| ||| || || ||||||| Sbjct 38079 ACTAAGCATCGGCTAAACCCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCGAGCGTTA 38020 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||||||| | | ||||||||||||| || |||||| Sbjct 38019 TCCGGAATGA-TTGGGCGTAAAGGGTCCGCAGGTGG 37985 Score = 286 bits (316), Expect = 1e-74 Identities = 270/336 (80%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||||||||||||||||||| ||||| ||| | ||||||| ||||||||| || | | Sbjct 141040 GCGTCTGATTAGCTAGTTGGGGGGGTAATGGCCTCCCAAGGCAACGATCAGTTGCTGGTC 141099 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 141100 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 141159 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | |||| |||||||| |||||| Sbjct 141160 AGTGAGGAATCTTCCGCAATGGGCGAAAGCCTGACGGGGCAATGCCGCGTGGAGGATGAA 141219 Query 341 GG-CCTTCGGGTCGTAAAGCTCTGT-CCTCA---AGGAAGATAATGACGGTACTTG-AGG 394 || || |||||||||| ||| | ||| | ||||| |||||||||| || || Sbjct 141220 GGCCCAATGGGTCGTAAACTTCTTTAGATCAGAGACGAAGA-GATGACGGTACCTGAAGA 141278 Query 395 AGGAAGCCCCGGCT-AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 | |||| ||||| ||| |||||||||||||||||||| ||| || || ||||||| Sbjct 141279 ACTAAGCATCGGCTAAACCCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCGAGCGTTA 141338 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||||||| | | ||||||||||||| || |||||| Sbjct 141339 TCCGGAATGA-TTGGGCGTAAAGGGTCCGCAGGTGG 141373 >seq1783 Length=336207 Score = 89.7 bits (98), Expect = 2e-15 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 374 AGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAA 433 ||| |||||| |||||| | ||||||||| || ||| ||||||||||| |||| ||| Sbjct 124510 AGACAATGACAAGACTTGAAAAAGAAGCCCCGTCTTACTCCGTGCCAGCAGACGCGCTAA 124569 Query 434 TACGTAGGGG-GCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || | |||| |||| ||||| | ||| || | ||||||||||||| ||||| ||| Sbjct 124570 TAGGGGGGGGCCCTAGTGTTATTCAGAA-TAATTGGGCGTAAAGGGTTTGTAGGCGGT 124626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497572833536