Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1814 221 3e-55 seq1813 215 1e-53 seq1783 89.7 1e-15 >seq1814 Length=106468 Score = 221 bits (244), Expect = 3e-55 Identities = 295/401 (74%), Gaps = 13/401 (3%) Strand=Plus/Plus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 ||||||||| |||||| ||||||||||| |||||||||||| ||||||||| ||||| | Sbjct 48237 GAAGCCCCGTCTAACTCCGTGCCAGCAGACGCGGTAATACGGGGGGGGCTAGTGTTATTC 48296 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTC-TTAAG-TCAGAGGTGAAAGGCTA 129 |||| | |||||||||||||| |||||| ||| || || ||||| | ||| | Sbjct 48297 AGAATAATTGGGCGTAAAGGGTACGTAGGCGGTCAGATTGAGCTCAGACCT--AAGCCAT 48354 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTG--CAGGGCTAGAGTGCAGGAGGGGCAAGT 187 |||| |||| |||| | | ||| | ||| | | | |||| |||| ||| Sbjct 48355 AGGCTTAACCTATGGACGG-TCTTGCAGCTGTTCTGTCTTTGAGTTGGATAGGGAAGAGT 48413 Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| |||||| || | | |||| | |||||||||| ||||| || | ||||||||| Sbjct 48414 GGAATTTCTAGTGGAGAGATTAAATTCATAGATATTAGAAGGAAGGCCGGCGGCGAAGGC 48473 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 || | || |||||| || ||| |||||||||||||||||||| |||||||| Sbjct 48474 AACTCTTTAGATCCAGACTGACGCTAAGGTACGAAAGCGTGGGGAGCAAACGGGATTAGA 48533 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCC 367 ||||| ||||||||||||||||||||||| | || | | || | | | || Sbjct 48534 TACCCCAGTAGTCCACGCCGTAAACGATGAGTGCTCGCCTTTGG---TCTT--TCGATCA 48588 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | | ||||||||| ||||| | ||| ||||||||||| Sbjct 48589 GG-GGCTTAGCAAACGCGATAAGCACTCCGCCTGGGGAGTA 48628 >seq1813 Length=181482 Score = 215 bits (238), Expect = 1e-53 Identities = 295/406 (73%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAA-CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 |||| ||||||| | |||||||||||||||||||| ||| || || |||||||||| Sbjct 38076 AAGCATCGGCTAAACCCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCGAGCGTTATCC 38017 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||||| | |||||||||||||| || |||||| | |||| | || ||| || | Sbjct 38016 GGAATGATTGGGCGTAAAGGGTCCGCAGGTGGCCCGGTCAGTCCGCTGTCAAAACCTGGG 37957 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||||||||| || || || || | ||||| |||| | | ||||||| |||| Sbjct 37956 GCTCAACCCTGGAGAGGCGGCGGAGACCACCGGGCTTGAGTCCGGTAGGGGCAGAGGGAA 37897 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 |||| ||| |||||||||||||||||| || ||| |||| ||| ||||||||| Sbjct 37896 TTCCCGGTGGAGCGGTGAAATGCGTAGAGATCGGGAAGAACGCCAAGGGCGAAGGCACTC 37837 Query 252 TGCT-GGACT------GTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 |||| || || | ||||||||| ||| ||| ||| ||||||| || ||||| Sbjct 37836 TGCTAGGCCTGATTTCGCGACTGACACTCAGGGACGAGAGCCAGGGGAGCGAATGGGATT 37777 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT--AAGT 362 |||||||| ||||||| ||||||||||||| |||| | | | | ||| || | Sbjct 37776 AGATACCCCAGTAGTCCTGGCCGTAAACGATGGATACCAAG-CCCTGCGCGTATCGACCC 37718 Query 363 GCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || || | ||| |||||| |||||| || ||||||||||| Sbjct 37717 GGGCAGG-GCTGTAGCTAACGCATGAAGTATCCCGCCTGGGGAGTA 37673 Score = 215 bits (238), Expect = 1e-53 Identities = 295/406 (73%), Gaps = 12/406 (3%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAA-CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 |||| ||||||| | |||||||||||||||||||| ||| || || |||||||||| Sbjct 141282 AAGCATCGGCTAAACCCCGTGCCAGCAGCCGCGGTAAGACGGGGGATGCGAGCGTTATCC 141341 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||||| | |||||||||||||| || |||||| | |||| | || ||| || | Sbjct 141342 GGAATGATTGGGCGTAAAGGGTCCGCAGGTGGCCCGGTCAGTCCGCTGTCAAAACCTGGG 141401 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||||||||| || || || || | ||||| |||| | | ||||||| |||| Sbjct 141402 GCTCAACCCTGGAGAGGCGGCGGAGACCACCGGGCTTGAGTCCGGTAGGGGCAGAGGGAA 141461 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 |||| ||| |||||||||||||||||| || ||| |||| ||| ||||||||| Sbjct 141462 TTCCCGGTGGAGCGGTGAAATGCGTAGAGATCGGGAAGAACGCCAAGGGCGAAGGCACTC 141521 Query 252 TGCT-GGACT------GTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 |||| || || | ||||||||| ||| ||| ||| ||||||| || ||||| Sbjct 141522 TGCTAGGCCTGATTTCGCGACTGACACTCAGGGACGAGAGCCAGGGGAGCGAATGGGATT 141581 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT--AAGT 362 |||||||| ||||||| ||||||||||||| |||| | | | | ||| || | Sbjct 141582 AGATACCCCAGTAGTCCTGGCCGTAAACGATGGATACCAAG-CCCTGCGCGTATCGACCC 141640 Query 363 GCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || || | ||| |||||| |||||| || ||||||||||| Sbjct 141641 GGGCAGG-GCTGTAGCTAACGCATGAAGTATCCCGCCTGGGGAGTA 141685 >seq1783 Length=336207 Score = 89.7 bits (98), Expect = 1e-15 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG-GC 60 |||||| | ||||||||| || ||| ||||||||||| |||| ||||| | |||| | Sbjct 124523 ACTTGAAAAAGAAGCCCCGTCTTACTCCGTGCCAGCAGACGCGCTAATAGGGGGGGGCCC 124582 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 ||| ||||| | |||| | |||||||||||||| ||||| ||| Sbjct 124583 TAGTGTTATTCAGAATAATTGGGCGTAAAGGGTTTGTAGGCGGT 124626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203178173952