Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1813 214 6e-53 seq1814 150 6e-34 >seq1813 Length=181482 Score = 214 bits (236), Expect = 6e-53 Identities = 392/563 (70%), Gaps = 16/563 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||| |||||||||||||||| ||| |||||||| || |||||| || Sbjct 31569 TCGACTTGTTGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTACACTCTACAACTGATTCCC 31628 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| ||||||| |||| ||||||||| | | ||||||| Sbjct 31629 GTCCAGCCTGAGGGAACCTTTGCACGCCTCCATTACTCTTTGGGAGGCCT-CTGCCCCAG 31687 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGG--TTAG-ATATC 177 ||||| | || ||||| || || ||| | ||||| || || | |||| || | Sbjct 31688 AGAAACTGTCTGCCTGGCACGGTTCC-AACGCCTATCATAGGGCATCGGTTTAGGATCTT 31746 Query 178 --CACTACGGTCAGAGTGGTATTTCAACAACGACTC--CACAACCACTAGCGTGGCCGCA 233 | || | ||| ||||| | ||| | | || | | || | | || Sbjct 31747 AGCCCTTC---CAGGGTGGTCTCTCACGGATGGCTTGGCCCTTCCCGGAAGAAGA--GCT 31801 Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 || | |||||||||| || | || | |||| ||||| ||| | | ||| | Sbjct 31802 TCTGTGCCTCCCACCTAGGCTGCGCAGGGAGGGCCGAGACCCAATGCCAGGGAACAGTAA 31861 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | | | | ||||||| || | | | || Sbjct 31862 AGCTTCATAGGGTCTTTCTGTCCCAGTGGAGGTAGCCCGCATCTTCACAGGCATGTCTAT 31921 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||||| ||| | |||||||| | |||||||||| ||||||| |||| ||| Sbjct 31922 TTCACCGAGCCCCTCTCCGAGACAGCGCCCAAATCGTTACGCCTTTCGTGCGGGTCAGAA 31981 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||| |||| Sbjct 31982 CTTACCTGACAATGAATTTCGCTACCTTAGGATCGTTATAGTTACGACCGCCGTTGACTG 32041 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGG-TGTGCTCACGAGTCCTCTTAACCTTC 531 ||||||| || || || || | | | | || | | ||| | |||||||||| Sbjct 32042 GGGCTTCGGTTGCCAGCTTCCCCCCTCTCAAGGAGGGGGCCACCAACTTCCTTAACCTTC 32101 Query 532 CAGCACCGGGCAGGCGTCAGTCC 554 |||||| ||||||||||||| || Sbjct 32102 CAGCACTGGGCAGGCGTCAGCCC 32124 Score = 214 bits (236), Expect = 6e-53 Identities = 392/563 (70%), Gaps = 16/563 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||| |||||||||||||||| ||| |||||||| || |||||| || Sbjct 147789 TCGACTTGTTGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTACACTCTACAACTGATTCCC 147730 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| ||||||| |||| ||||||||| | | ||||||| Sbjct 147729 GTCCAGCCTGAGGGAACCTTTGCACGCCTCCATTACTCTTTGGGAGGCCT-CTGCCCCAG 147671 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGG--TTAG-ATATC 177 ||||| | || ||||| || || ||| | ||||| || || | |||| || | Sbjct 147670 AGAAACTGTCTGCCTGGCACGGTTCC-AACGCCTATCATAGGGCATCGGTTTAGGATCTT 147612 Query 178 --CACTACGGTCAGAGTGGTATTTCAACAACGACTC--CACAACCACTAGCGTGGCCGCA 233 | || | ||| ||||| | ||| | | || | | || | | || Sbjct 147611 AGCCCTTC---CAGGGTGGTCTCTCACGGATGGCTTGGCCCTTCCCGGAAGAAGA--GCT 147557 Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 || | |||||||||| || | || | |||| ||||| ||| | | ||| | Sbjct 147556 TCTGTGCCTCCCACCTAGGCTGCGCAGGGAGGGCCGAGACCCAATGCCAGGGAACAGTAA 147497 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | | | | ||||||| || | | | || Sbjct 147496 AGCTTCATAGGGTCTTTCTGTCCCAGTGGAGGTAGCCCGCATCTTCACAGGCATGTCTAT 147437 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||||| ||| | |||||||| | |||||||||| ||||||| |||| ||| Sbjct 147436 TTCACCGAGCCCCTCTCCGAGACAGCGCCCAAATCGTTACGCCTTTCGTGCGGGTCAGAA 147377 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||| |||| Sbjct 147376 CTTACCTGACAATGAATTTCGCTACCTTAGGATCGTTATAGTTACGACCGCCGTTGACTG 147317 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGG-TGTGCTCACGAGTCCTCTTAACCTTC 531 ||||||| || || || || | | | | || | | ||| | |||||||||| Sbjct 147316 GGGCTTCGGTTGCCAGCTTCCCCCCTCTCAAGGAGGGGGCCACCAACTTCCTTAACCTTC 147257 Query 532 CAGCACCGGGCAGGCGTCAGTCC 554 |||||| ||||||||||||| || Sbjct 147256 CAGCACTGGGCAGGCGTCAGCCC 147234 >seq1814 Length=106468 Score = 150 bits (166), Expect = 6e-34 Identities = 226/322 (70%), Gaps = 22/322 (7%) Strand=Plus/Minus Query 242 TCCCACCTATCCTACACAAACCGCACCGAAT--GCCAATACCAAGCTATAGTGAAGGTCC 299 |||||||||| ||||||| | |||| |||| | | |||||||||| ||||| | Sbjct 53265 TCCCACCTATTCTACACAT--CATACCGGGGTGGCCAGTGCAAAGCTATAGTAAAGGTGC 53208 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 ||||||||| |||| ||||| | | ||||||| || | | ||| ||||| Sbjct 53207 ACGGGGTCTTACCGTCTAGCCGCTGGTACTCCGCATCTTCACGGAGAATTCAAATTCACT 53148 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 |||| | |||||||| ||| |||||| || |||||| |||||| || | ||| Sbjct 53147 GGGCTCACCTTGGAGACAGCGGGGCAGTCGTGACACCATTCATGCAGGACGTTAATTATA 53088 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 || ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| Sbjct 53087 CGTCAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTT 53028 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 ||| || | | || || |||| || ||||| ||||||| Sbjct 53027 TCATT-----------------CGAAGCATACTTACCTCTCCTATTCACCTTACAGCACC 52985 Query 539 GGGCAGGCGTCAGTCCGTATAC 560 ||||||| ||||| | ||||| Sbjct 52984 GGGCAGGTGTCAGACTCTATAC 52963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702369118464