Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1324 118 8e-22 seq965 87.8 1e-12 >seq1324 Length=68835 Score = 118 bits (130), Expect = 8e-22 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417 ||||||| ||||||| || ||||| ||||| |||||| ||||||| || |||||||| Sbjct 21176 CCAGAGGCCGTAGAACAGGTCGCGCGCTCGCACCTCCTCCTTGCCGTGGTTCTTGCGCAA 21235 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACG 66470 ||| || ||||||||||||| |||||||| |||||||| || ||||| |||| Sbjct 21236 GTCTAGCCACTCAAAGATGTCCGCATGCCACGGTTCCAGATAAATGGCAAACG 21288 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 |||||| ||| || |||| || || |||||||||||||| |||| ||||| ||| Sbjct 20428 CACAAAGCGGGGCAGCGCAATGGAGGCCAGGTTGCAGACAGCCGTCTCCTCAGGGCTGGT 20487 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||||| || || ||||||||||| || ||| |||||||||| ||||| || || Sbjct 20488 GTACTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGTT 20547 Query 66112 ACTCTTGCGATTGCATGCATCCT 66134 |||||||| |||||||| |||| Sbjct 20548 GCTCTTGCGGTTGCATGCGTCCT 20570 Score = 93.3 bits (102), Expect = 3e-14 Identities = 170/243 (70%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 65690 CCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAA 65749 |||||||||||||| || || ||| ||| || ||||| | || ||||||||||| Sbjct 19900 CCCTCCTCCTTGGCGAGCTGGCAGGAGGTGCGCAGCGCGGCGTAGTAGATGGTCTCGAAG 19959 Query 65750 ATG-CGTCGATTAAGTTCACGTGCCTCATCGCTC--TCGTACGGCATACCCATCAGGACA 65806 | | | | | || || | | ||||| || | ||| | | ||| |||| ||||| Sbjct 19960 ACGTCCTTG-TTGAGCTGCTGCGCCTC--CGGTGAGTCGAAGGCCATCCCCAGCAGGATG 20016 Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 || ||||||||||| || || || || || |||||||| || || |||| ||||| || Sbjct 20017 AACGTGTCGGCCAGCCCCTGCACGCCGATGCCGATGGGCCGGTGCCGCATGTTGGACCGC 20076 Query 65867 CTCGC---CTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTC 65923 | || ||| | |||||||||| || | ||||| ||||| ||||| ||| ||| Sbjct 20077 CGAGCAGTCTCCG---CAGGGTAGTAGTTCACGTCGATGATGCGGTTCAAGGAGCGCGTC 20133 Query 65924 ACC 65926 || Sbjct 20134 GCC 20136 >seq965 Length=28847 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTG-CTCCTCAAT 66399 || || ||||| || | |||||||||| |||||| || | ||| | | |||||| | Sbjct 1552 ATGAACAGATCCGGCACCCAGAGGGCGGTGAAGAGGTCTC-TGCACCTCATCTCCTCTTT 1610 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||| || ||||||| |||||||| || ||||| || || ||||| || |||||||| Sbjct 1611 GCCGCTGTTCTTGCGCAGCTCGAGGAAGTCGAAGATATCAGCGTGCCACGGCTCCAGGTA 1670 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCC 66489 ||| | || |||||| | || || || || Sbjct 1671 GATTGTGATGGAGCCCTTCCGCTTCCCCCC 1700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559210516960