Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1813 571 6e-158 >seq1813 Length=181482 Score = 571 bits (632), Expect = 6e-158 Identities = 737/1011 (73%), Gaps = 5/1011 (0%) Strand=Plus/Plus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 || ||||||||| || ||| | || || |||||||| ||||| || | ||| | || Sbjct 117406 GATGACTGGCTTCGTCGTGATAGGTTTGTATTTGTTGGTTGGTCAGGTTTACTTTTGTTC 117465 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || |||||| ||||| |||||||||||||||| || || ||||| | || ||| Sbjct 117466 CCTTGTGCTTACTTTGCTCTTGGCGGTTGGCTTACCGGAACAACTTTTGTAACATCATGG 117525 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGT 161705 ||||| ||||| | || || || || |||||||| ||||| |||| | || || || || Sbjct 117526 TATACTCATGGGTTGGCAAGCTCTTACCTTGAGGGCTGCAACTTTT-TGACTGCTGCCGT 117584 Query 161706 TAGCACTCCAGCTGAC-GCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 161764 || |||||| || ||| ||| |||||||||| | || ||||| || || |||| Sbjct 117585 GTCAACCCCAGCTAACAGCT-TGGCTCATTCTCTTTTACTATGGTGGGGGCCGGAAGCTC 117643 Query 161765 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 161824 |||| ||||| | ||| ||||| || || || |||| |||||| || | || | Sbjct 117644 AAGGAGATTTTACTCGTTGGTGTCAACTAGGTGGTCTTTGGACTTTTGTAGCTTTGCATG 117703 Query 161825 GGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTA 161884 | ||||| | ||||||||||||||||||| || |||||| | ||||| | || Sbjct 117704 GTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCTCGCTCTGTCCAAT 117763 Query 161885 TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTC 161944 | || ||||| || || |||||||| ||||| |||||| | |||||||| || || Sbjct 117764 TACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCAGTTTTTGTATCTGTGTTCT 117823 Query 161945 TCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTA 162004 | || |||||||| || || || |||||||| || ||| ||||| ||||| || | Sbjct 117824 TAATTTATCCTCTTGGTCAATCAGGTTGGTTCTTTGCTCCAAGTTTTGGAGTTGCAGCAA 117883 Query 162005 TTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACA 162064 | ||| | ||| | | || | |||||||| || || ||||| ||||| || ||||| | Sbjct 117884 TCTTCCGTTTCATTTTGTTTTTCCAAGGTTTTCATAACTGGACACTTAACCCTTTCCATA 117943 Query 162065 TGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTG 162124 |||||||||| || ||| | || || | |||| | |||| ||| ||||| || | |||| Sbjct 117944 TGATGGGTGTGGCTGGTGTTTTAGGAGCTGCTCTTCTCTGTGCAATTCATGGCGCAACTG 118003 Query 162125 TTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTA 162184 | |||||||| | | ||||||| || || || |||||| || ||| || ||| Sbjct 118004 TGGAAAACACTTTGTTTGAAGATGGAGATGGTGCGAACACTTTCCGTGCCTTTAACCCTA 118063 Query 162185 CGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCG 162244 | || || || || || || ||||||||||| |||||||||||||| |||||||| | Sbjct 118064 CACAGTCCGAAGAAACATATTCCATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 118123 Query 162245 GTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGG 162304 ||||||||||| || || || ||| | |||||||||||||| || ||||| || | || Sbjct 118124 GTATTGCTTTTTCGAACAAACGATGGCTTCATTTCTTTATGCTTTTTGTTCCTGTAACGG 118183 Query 162305 GTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACT 162364 | || |||| || | || ||| | | || || ||||| |||||| | || || || | Sbjct 118184 GGCTTTGGATGAGCGCAATTGGTGTAGTAGGTCTTGCTCTCAATCTTAGAGCATATGATT 118243 Query 162365 TTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGA 162424 |||||||||| |||||||| || || || ||||||||||||||||| || ||||| || | Sbjct 118244 TTGTATCTCAAGAGATTCGAGCTGCAGAAGATCCTGAATTTGAAACTTTTTACACAAAAA 118303 Query 162425 ATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGA 162484 | || || || ||||| ||| | || || ||| |||| | ||||| || ||||| | Sbjct 118304 ACATTCTTTTAAATGAGGGTATCCGAGCCTGGATGGCCGCTCAAGATCAGCCTCATGAAA 118363 Query 162485 ACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 | |||||||||||||||| || || || | || ||||| || | ||||| Sbjct 118364 ATCTTGTATTCCCTGAGGAGGTCCTACCACGTGGAAACGCTCT-TTAATGG 118413 Score = 520 bits (576), Expect = 1e-142 Identities = 510/658 (78%), Gaps = 0/658 (0%) Strand=Plus/Plus Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 ||| ||||| ||||||||||| || | |||| | || |||||||| ||||| ||| Sbjct 72436 CTACATGGGCCGTGAGTGGGAGCTTAGCTTCCGTTTGGGCATGCGTCCTTGGATTGCTGT 72495 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 || ||||||||||| || || |||||| | || || ||| | ||||||| | ||||| Sbjct 72496 AGCTTACTCTGCTCCGGTTGCAGCTGCTACCGCAGTGTTCTTGATCTACCCTATTGGTCA 72555 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308 || ||||| |||| |||||||||||| || || || ||||| |||| |||| |||| Sbjct 72556 AGGCAGCTTCTCTGATGGTATGCCTCTTGGCATTTCCGGCACTTTCAACTTTATGATTGT 72615 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 |||||||| || ||||| || |||||||| || ||||||||||| ||||| ||||| || Sbjct 72616 GTTCCAAGCTGAGCACAACATTCTTATGCACCCTTTCCACATGCTTGGTGTGGCTGGCGT 72675 Query 160369 ATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAG 160428 || || || |||||||| |||||||||||| || |||||||||| || | || | Sbjct 72676 GTTTGGCGGCTCTCTGTTTAGTGCTATGCATGGTTCCTTGGTTACTTCCAGCTTAATCCG 72735 Query 160429 AGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC 160488 ||||| || |||| ||||| ||| |||||||||||| |||||||| | || || Sbjct 72736 TGAGACTACTGAAAACGAGTCTGCTAACGCTGGTTACAAGTTTGGTCAAGAAGGTGAAAC 72795 Query 160489 TTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTT 160548 |||||||||||| || || || || ||||| ||||| | || |||||||| || ||| Sbjct 72796 TTACAACATCGTGGCTGCTCACGGTTACTTTGGTCGCCTAATTTTCCAATACGCTAGCTT 72855 Query 160549 TAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTT 160608 |||||||| || ||| ||||||||||||| |||||||||||||| || || |||||||| Sbjct 72856 CAACAACTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGCATCTGGTT 72915 Query 160609 CACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTC 160668 ||||| |||||| | || ||||| ||||| || || ||||||||||||||||| || Sbjct 72916 TACTGCTCTTGGTATCAGCACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAATC 72975 Query 160669 CATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGG 160728 | | |||| |||||| | || | ||||||||||| ||| | | ||||| || Sbjct 72976 TGTGGTTGACAGCCAAGGCCGTGTGATCAACACTTGGGCTGACATCATCAACCGTGCAAA 73035 Query 160729 TCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCT 160786 || || |||||||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct 73036 CCTTGGTATGGAAGTGATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTAGCT 73093 Score = 205 bits (226), Expect = 1e-47 Identities = 217/286 (76%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 44484 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 44425 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922 |||||||| || || ||| | ||||| | || || | ||||||||||||||||| Sbjct 44424 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 44365 Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAAC 159982 ||||||||||||||||| || ||||| || || ||||||| | |||| ||||||||| Sbjct 44364 CCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAAC 44305 Query 159983 ATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATT 160042 |||||||||||||| || | || | || || ||||||||||||||||| || || Sbjct 44304 ATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATC 44245 Query 160043 TGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTT 160088 ||||| || || || || || || ||||| || ||||| || |||| Sbjct 44244 TGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 44199 Score = 205 bits (226), Expect = 1e-47 Identities = 217/286 (76%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 134874 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 134933 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922 |||||||| || || ||| | ||||| | || || | ||||||||||||||||| Sbjct 134934 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 134993 Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAAC 159982 ||||||||||||||||| || ||||| || || ||||||| | |||| ||||||||| Sbjct 134994 CCTGTGGACATCGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTGCTGTATGGTAACAAC 135053 Query 159983 ATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATT 160042 |||||||||||||| || | || | || || ||||||||||||||||| || || Sbjct 135054 ATCATCTCTGGTGCTATTATCCCTACCTCTGCTGCCATTGGTCTTCACTTCTACCCTATC 135113 Query 160043 TGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTT 160088 ||||| || || || || || || ||||| || ||||| || |||| Sbjct 135114 TGGGAGGCTGCTTCCCTTGATGAATGGCTTTACAACGGCGGCCCTT 135159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551363497549200